Protein

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Genbank accession
AFV50627.1 [GenBank]
Protein name
hypothetical protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
Protein sequence
MTTSLIQPTFSRGEIGPELAARTDLAAYQTGLAKCINFIISPYGGAQNRPGTQFLAQTAGNEVARLIRFKFNVNDTYALEFTHLKMRIFRNGALVVYSSGPNVGQIFELVTPFTRDQLFEMNFTQSADVMDIVHPAHKPKKLKRFAHDNWTLTDVSLVPAVPAPASATATPDAGGSSTVLIAWQYQVTAVVDDGSQTPEESLPVTSNSINVKSDNQKATLTWPAVVGATYYNVYKDNAGAGIYGFVGRATSTSFTDVNITPTKTDTPPTGADPFIGAGNFPRAVAYFQQRLVYASTENKPQTLWFSRTGVFTNFGYSFPTKDDDAITWTIASNEVNQINHVMPLRALMTFTDGAEWIIQGQSSGFTAKTINGDPQTYNGIGQLRPLVLNNTALYAQERGRTVTAFGYTLESDGFSGSDISVLSPQMLQEYSLVDWDYQKIPYSIVWGAREDGAMVGITYLAEQQVIGWHRHYTDGTVLSVCSVPEGRRDAVYLCVERVINGVAKRYVERMADRQPERYRGTPLIKYSWFLDSALMYDGTNQSATTITIMGGTEWKYPEALTATSSASLFSPGDVGDSIQYLATPDADPFRMVITAYGSPTQVTVRPYGEVPTAIRGVAFTSWAFARNTLSGLSHLEGKKVTVLADGNVTKDVTVTSGAIELDTPAGVVLVGLPYECELQTLEVTFGGQETLSDKAKIIQQVTAVLLESRGGFYGTANEESKLWEFKPRQDSDDYGPIQAFTGKATQVITDNWSGNGQITVVQKDPLPMTILALIPATEVGGRK
Physico‐chemical
properties
protein length:783 AA
molecular weight: 85433,06950 Da
isoelectric point:5,19153
aromaticity:0,10217
hydropathy:-0,18531

Domains

Domains [InterPro]
DC_0058
STR
1–774
DC_0058
IPR013783
STR
200–266
IPR013783
AFV50627.1
1 783
Architecture
STR
STR 1-774 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
AFV50627.1
1 783
Domain Start End Length (AA) Confidence
N-terminal 1 532 532 0,9289
Central domain 533 731 200 0,2853
C-terminal 732 783 51 0,0536
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-532
Central
533-731
C-terminal
732-783

Taxonomy

  Name Taxonomy ID Lineage
Phage Pseudomonas phage AF
[NCBI] 		1235689 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Pseudomonas putida
[NCBI] 		303 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Pseudomonadales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
AFV50627.1 [NCBI]
Genbank nucleotide accession
JX676771 [NCBI]
CDS location
range 8127 -> 10478
strand +
CDS
ATGACCACATCCCTCATTCAGCCTACGTTCTCCCGCGGTGAAATCGGTCCTGAGCTTGCTGCACGCACCGATCTTGCCGCATATCAGACTGGCCTGGCCAAGTGCATCAACTTCATCATCAGTCCGTATGGCGGCGCTCAGAACCGTCCGGGCACTCAGTTCCTGGCACAGACTGCCGGCAATGAGGTGGCACGTCTGATCCGCTTCAAGTTCAACGTGAACGACACCTACGCCCTCGAGTTCACGCATCTCAAGATGCGGATCTTCCGCAATGGCGCGCTTGTCGTGTACAGCAGCGGCCCGAACGTTGGGCAGATCTTCGAACTGGTAACGCCATTCACCCGCGACCAGCTGTTCGAAATGAACTTCACCCAGTCTGCGGATGTGATGGACATCGTGCATCCGGCGCACAAGCCCAAGAAGCTGAAGCGTTTTGCGCATGACAACTGGACCCTGACCGATGTGAGCCTTGTTCCTGCGGTGCCAGCGCCGGCCAGCGCGACAGCAACGCCTGATGCCGGTGGCAGCTCAACAGTCCTGATCGCCTGGCAGTACCAAGTCACAGCTGTGGTCGATGACGGCAGCCAAACCCCTGAAGAGTCTCTTCCGGTCACCTCGAACTCGATCAACGTGAAGAGCGACAACCAGAAGGCCACGCTAACCTGGCCTGCCGTCGTCGGCGCGACCTACTACAACGTGTACAAGGACAATGCCGGCGCAGGCATCTACGGCTTCGTCGGTCGCGCTACCTCGACCAGCTTCACCGACGTGAATATCACGCCGACCAAGACCGATACCCCGCCCACCGGTGCCGACCCATTCATCGGTGCAGGCAACTTCCCCCGGGCTGTCGCCTACTTCCAGCAGCGATTGGTGTATGCCAGTACCGAGAACAAGCCTCAGACGCTCTGGTTTAGCCGTACAGGCGTGTTCACCAACTTCGGCTACTCGTTCCCAACCAAAGACGACGACGCGATCACATGGACGATTGCGAGCAACGAGGTGAACCAGATCAACCATGTGATGCCTCTGCGTGCCCTGATGACCTTCACCGACGGTGCAGAGTGGATCATTCAGGGGCAGAGCAGCGGATTCACGGCCAAGACCATCAACGGCGACCCGCAGACGTACAACGGCATCGGCCAGCTTCGGCCTCTGGTGCTGAACAACACCGCGCTTTATGCGCAGGAGCGTGGCCGAACCGTCACGGCCTTTGGCTATACGCTCGAATCGGATGGCTTCAGCGGCAGCGACATCAGCGTGCTCTCTCCGCAGATGCTGCAGGAATACAGCCTGGTCGACTGGGACTACCAGAAGATCCCATACAGCATCGTGTGGGGTGCGCGGGAGGATGGCGCCATGGTCGGCATCACCTACCTGGCAGAACAGCAGGTTATCGGCTGGCACAGACACTACACCGACGGCACCGTGCTTTCCGTTTGCTCTGTGCCAGAGGGGCGCCGTGATGCGGTTTATCTGTGCGTTGAGCGCGTCATCAATGGTGTGGCGAAGCGTTACGTCGAACGCATGGCAGATCGGCAGCCAGAGCGCTACAGGGGCACTCCGCTGATCAAGTACTCATGGTTCCTCGATAGCGCCCTGATGTACGACGGGACAAACCAATCAGCAACCACAATCACCATCATGGGTGGCACCGAGTGGAAATATCCTGAGGCTCTCACCGCTACTTCAAGCGCAAGCCTGTTCTCCCCTGGCGACGTTGGGGATTCGATCCAGTACCTTGCCACGCCAGATGCTGACCCTTTCCGCATGGTCATCACGGCATACGGAAGTCCTACACAAGTCACTGTCAGGCCCTATGGCGAAGTGCCGACCGCCATCCGTGGCGTGGCATTCACATCCTGGGCGTTCGCACGCAACACGCTTTCAGGCCTGAGCCACCTTGAGGGTAAGAAGGTCACAGTCTTGGCGGATGGCAACGTTACCAAGGACGTTACCGTCACATCTGGCGCCATTGAACTCGACACCCCGGCAGGCGTAGTTCTTGTGGGCCTGCCATACGAATGCGAACTGCAGACCCTAGAGGTAACTTTCGGCGGCCAGGAAACCCTTTCCGACAAGGCCAAGATCATTCAGCAGGTGACAGCGGTTCTGCTTGAATCCCGTGGCGGCTTCTACGGTACCGCCAACGAGGAATCGAAACTGTGGGAGTTCAAGCCTCGCCAAGACTCCGACGACTACGGCCCAATCCAGGCCTTCACTGGCAAAGCTACCCAAGTCATCACCGATAACTGGAGCGGGAACGGCCAGATAACCGTGGTTCAGAAGGACCCGCTGCCAATGACCATCCTGGCGCTGATCCCGGCGACCGAAGTCGGTGGCCGCAAATGA

Genome Context

Genome Context

Tertiary structure

PDB ID
f5bf4aa25770b50c6afc1234ee1f9543b60b3a48a39e9888a0ab4b37517778cf
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,9129
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Identification of EPS-degrading activity within the tail spikes of the novel Pseudomonas putida phage AF Cornelissen,A., Ceyssens,P.J., Krylov,V.N., Noben,J.P., Volckaert,G. and Lavigne,R. 2012 23084421 GenBank