Protein

View in Explore
Genbank accession
AGG54342.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence Phold
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
Protein sequence
MALTKINGNNIDTTTEALIKVLQLSGNGAYLKLPQYASQSAINSAIPSPAFGTIVFNNEEDAAQIYVADASQGNAGWTSVGGGGPSIGENSVIRTSQNFIESSVNIGSTSNGGVEFANAFSIGPITINSGVTVGMDNGSEWTIIGTNQYSSYRN
Physico‐chemical
properties
protein length:154 AA
molecular weight: 15916,24960 Da
isoelectric point:4,25061
aromaticity:0,07792
hydropathy:-0,09805

Domains

Domains [InterPro]

No domain annotations available.

Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
AGG54342.1
1 154
Domain Start End Length (AA) Confidence
N-terminal 1 95 95 0,6425
Central domain 96 143 49 0,6168
C-terminal 144 154 10 0,7786
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-95
Central
96-143
C-terminal
144-154

Taxonomy

  Name Taxonomy ID Lineage
Phage Cyanophage S-SSM6b
[NCBI] 		682651 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host No host information

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
AGG54342.1 [NCBI]
Genbank nucleotide accession
HQ316603.1 [NCBI]
CDS location
range 66669 -> 67133
strand -
CDS
ATGGCACTAACTAAGATCAATGGTAATAACATTGATACTACAACTGAAGCATTGATTAAGGTACTTCAGTTGAGTGGCAATGGTGCATACTTAAAGTTACCACAATACGCATCACAATCAGCAATCAACTCAGCAATTCCGTCACCTGCATTTGGTACGATTGTATTCAACAATGAAGAAGATGCAGCGCAAATATACGTTGCTGATGCTTCGCAAGGAAACGCGGGATGGACATCTGTAGGTGGTGGTGGACCTTCTATCGGTGAGAATAGTGTCATTAGAACTTCACAGAATTTTATTGAGTCAAGTGTAAATATCGGTTCAACTTCTAACGGTGGTGTTGAATTCGCTAACGCATTCAGTATTGGTCCCATTACTATTAATAGTGGTGTGACAGTAGGCATGGACAACGGTTCAGAGTGGACGATCATTGGAACCAATCAGTACAGTAGTTACAGAAATTAG

Genome Context

Genome Context

Tertiary structure

PDB ID
49e7e57c1aba02ea09fe1109ef024a86c25ebd4d1f80de2c44fd6f2f777bda90
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,6059
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
The Genome Sequence of Cyanophage S-SSM6b Henn,M.R., Sullivan,M.S., Osburne,M.S., Levin,J., Malboeuf,C., Casali,M., Russ,C., Lennon,N., Erlich,R., Young,S.K., Koehrsen,M., Yandava,C., Zeng,Q., Alvarado,L., Anderson,S., Berlin,A., Borenstein,D., Chen,Z., Engels,R., Freedman,E., Gellesch,M., Goldberg,J., Green,L., Griggs,A., Gujja,S., Heiman,D., Hepburn,T., Howarth,C., Jen,D., Larson,L., Lewis,B., Mehta,T., Park,D., Pearson,M., Roberts,A., Ryan,E., Saif,S., Shea,T., Shenoy,N., Sisk,P., Stolte,C., Sykes,S., Walk,T., White,J., Yu,Q., Coleman,M.L., Huang,K.H., Weigele,P.R., DeFrancesco,A.S., Kern,S.E., Thompson,L.R., Fu,R., Hombeck,B., Chisholm,S.W., Haas,B., Nusbaum,C., Galagan,J. and Birren,B. 2011-09-23 — GenBank