Protein

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Genbank accession
XQO94812.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence Phold
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,86
Protein sequence
MSTLTELVQRIEVALSEKLEPDSEVLRRFVHEVEVISLNSGELLRTLKKFQLDNQEIFNNTLLEMQGDFGAFLTALENDQNEIYRWLLEIRQLNEDVRETADLAFSLTSYKGDWLDASGVSNVPASFRHNGYFWVQLVDIADIASEEPDDLNAKYKKVLDSIDIVYALDQALGDNSKSFPKNPVLSASVYNVSSPIPQTQTADSGTTHLRVDGMLCKLSAVVSGNITALNKTAKVATIGGVSVSYQTLNDIDASIVSFIENSSKILEGQVSIFPVSSKLNCQAYSGSNISVSSIPAGTTHIRFNSKIFWLGKLVSGPIQSISETLVTVTGNSSRLFPFSINSNVKTDQTGGSALIPSGPSSKRLPLAEVPEGFKPIRFNDDLQEWEGMNGEGIYDTIGGGGLPPLMQASGSFSVEKNKAYEVDLSTSDGVVTVVEGMLDTKWFGIKTKNFSVRPNAVITINFTNEFAVDNKGNEYGSFLIDRPCTVYFQKIDGKWAVVDATY
Physico‐chemical
properties
protein length:502 AA
molecular weight: 54918,13350 Da
isoelectric point:4,75011
aromaticity:0,08765
hydropathy:-0,13227

Domains

Domains [InterPro]
Coil
Unmapped
76–96
Coil DC_2319
DC_1718
STR
256–365
DC_1718
XQO94812.1
1 502
Architecture
STR
STR 141-365 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
XQO94812.1
1 502
Domain Start End Length (AA) Confidence
N-terminal 1 410 410 0,9675
Central domain 411 491 82 0,0305
C-terminal 492 502 10 0,9883
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-410
Central
411-491
C-terminal
492-502

Taxonomy

  Name Taxonomy ID Lineage
Phage Vibrio phage VPALA
[NCBI] 		3400948 Viruses > unclassified bacterial viruses >
Host Vibrio anguillarum ALA
[NCBI] 		1416571 Arthropoda > Malacostraca > Decapoda > Mithracidae >

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
XQO94812.1 [NCBI]
Genbank nucleotide accession
PV171464.1 [NCBI]
CDS location
range 97808 -> 99316
strand +
CDS
ATGTCAACTCTTACAGAGCTCGTCCAGCGCATAGAAGTAGCACTGAGCGAAAAATTAGAACCAGACAGTGAAGTGTTGAGAAGGTTCGTACATGAAGTTGAAGTCATATCGCTTAACAGCGGTGAGTTGTTGCGCACGCTGAAGAAATTTCAGCTTGACAACCAAGAGATATTCAATAACACCTTGCTGGAAATGCAAGGTGATTTCGGTGCGTTTCTCACGGCACTGGAGAATGATCAAAATGAGATCTATCGGTGGCTTCTAGAGATACGCCAGTTGAACGAAGATGTACGCGAGACTGCAGATTTAGCGTTTTCACTTACTTCATACAAAGGTGATTGGTTAGACGCTAGTGGTGTTTCTAATGTTCCCGCTTCGTTTAGACACAACGGGTATTTTTGGGTTCAGTTGGTCGATATTGCAGATATAGCATCTGAAGAGCCTGATGATCTGAATGCGAAGTATAAGAAAGTTCTCGACTCTATCGACATCGTTTATGCCCTCGATCAAGCGTTAGGTGACAATTCCAAATCGTTCCCCAAGAATCCGGTGTTAAGTGCTTCCGTTTATAATGTGAGCTCGCCGATACCGCAAACACAAACAGCTGATTCAGGTACGACTCATCTCAGGGTAGATGGGATGTTATGTAAACTGAGTGCAGTGGTTAGTGGTAACATCACGGCTTTGAATAAAACAGCTAAGGTTGCGACCATTGGTGGAGTTTCGGTATCGTATCAGACGTTGAATGATATCGATGCTTCTATCGTCTCTTTTATAGAGAACTCAAGTAAGATACTCGAGGGGCAAGTTTCTATTTTCCCAGTTTCGAGTAAATTAAATTGTCAGGCGTATAGCGGTAGCAACATTTCTGTTTCTTCAATACCTGCTGGTACCACTCATATCAGGTTCAACAGCAAAATATTTTGGTTAGGGAAACTTGTTTCCGGCCCGATTCAGTCAATTAGTGAAACTTTGGTAACAGTGACTGGTAACTCGTCAAGGTTATTCCCTTTCTCTATCAACTCAAATGTCAAGACTGATCAAACTGGTGGGTCGGCACTTATACCGTCCGGGCCTTCAAGCAAGAGGCTCCCCCTCGCTGAAGTACCAGAAGGATTTAAACCTATCAGGTTTAATGATGATCTACAAGAGTGGGAAGGTATGAATGGTGAAGGGATCTACGACACCATTGGTGGTGGCGGCTTACCCCCACTAATGCAAGCTTCTGGATCTTTTTCGGTTGAGAAGAACAAAGCGTACGAAGTTGATCTTTCTACCAGTGATGGAGTTGTAACAGTCGTTGAAGGGATGTTAGACACGAAATGGTTCGGAATTAAAACAAAGAACTTTAGTGTACGCCCTAATGCTGTGATTACCATTAACTTTACTAATGAATTTGCTGTGGATAATAAAGGTAATGAGTATGGTTCTTTTCTGATTGACCGTCCTTGTACTGTGTATTTCCAGAAGATTGACGGCAAGTGGGCAGTTGTAGATGCCACATACTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
7c4f7bda1ad3737a2479bf65dcc79511a9ce99995f0b4ef076b47d96c19265ec
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,6254
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Vibrio anguillarum phage VPALA Altinok,I., Ture,M., Cebeci,A., Ozturk,R.C. and Ustaoglu,D. 2015-10 — GenBank