Protein

View in Explore
Genbank accession
UCW43531.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence GenBank
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,90
TF
Evidence RBPdetect2
Probability 0,76
Protein sequence
MALVIHYTRNEDGTFDVKRYRDNPMNFVVNHVPDGVPVRVFIDEIGEDNDVTEDFEALKENATFHIVESAGGGAIKGVMKIFSVILKPLAKLLSPSVKGASSNLANSQADSPNNSLTDRNNKARPYERSYDICGTVQTIPNNLMSTYKVFNAAGKIVEYGYYDAGRGYLDIHPDGITDGDTRVSDITGTSVAVYAPYTSPNNTSTPQVMVGDPIEQGLYITVESNEVDGVVLKAPNGLGISFSYMSGYPSLSGNIGTIYDPTGGSDFSGVLVPNDTFSLVSAWTNTDVDLSGGGYQVLSVSEGTVTFIVPGGLIGRWQEIRPGSFFRGDGEASLQPDNTYEKTLTDWVSINRTEVERIVANIAAANGMYKDNGKSKTLASVTAEIQYQLLDENSVPYGPIYTAQGTVSGRTPDYNGVTIYADLPVVSRVRVRARRVTDLDFNFEGSVVDEITYVNLYGQTRDNTPHYGNRTTVHSMRKQTPRAAEVKQPQLRMIATEMVYKYLGNGVFEDTMTPNTQAVQSLIRLARDPDVGGLNLTVRNMDKLLAVQNEVEAYFGDKQAGEFCYTFDDYKTTMQDIVSTIADAIFCTPYRRGADILLDFERPRMGPEMVFTHRSKAGTSEKWTRTFNDSQVFDSLKFSYIDPKTNVKETITIPETGGLKTETYDSKGIRNYKQAFWAANRRHQKNILKKISVSFTATEEGIFALPNRAVSVVKGSRMATYDGYVTAVNGLTVELSQPVKFTSGDDHSLILKLRDGGVQSVNVVPGAHDRQVIMTSVPQEAIYTGNSALKTEFSFGNEARHNAQMILVSTVDPGDDRTVKITGFNYDKDFYKFDNVPPFGRAFSSGFDNGFN
Physico‐chemical
properties
protein length:852 AA
molecular weight: 93811,76070 Da
isoelectric point:5,22466
aromaticity:0,09742
hydropathy:-0,36068

Domains

Domains [InterPro]
DC_0118
STR
1–686
DC_0118 DC_0808
NF040662
Unmapped
352–832
NF040662
UCW43531.1
1 852
Architecture
STR
RBD
STR 1-686 | RBD 703-846 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
UCW43531.1
1 852
Domain Start End Length (AA) Confidence
N-terminal 1 231 231 0,9662
Central domain 232 430 200 0,6554
C-terminal 431 852 421 0,1575
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-231
Central
232-430
C-terminal
431-852

Taxonomy

  Name Taxonomy ID Lineage
Phage Salmonella phage YMFM0293
[NCBI] 		2879967 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Salmonella sp.
[NCBI] 		599 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
UCW43531.1 [NCBI]
Genbank nucleotide accession
OK357457.1 [NCBI]
CDS location
range 39387 -> 41945
strand +
CDS
TTGGCGCTAGTAATCCACTATACCCGTAACGAAGACGGCACATTTGACGTCAAACGTTATCGCGATAATCCAATGAACTTCGTCGTGAACCATGTTCCGGACGGGGTGCCGGTGCGTGTTTTCATTGACGAAATCGGAGAAGATAACGACGTAACAGAAGACTTCGAAGCACTGAAAGAAAACGCGACTTTCCACATTGTGGAATCCGCCGGGGGTGGCGCCATTAAAGGCGTCATGAAGATTTTTAGCGTTATTCTTAAACCGTTGGCGAAGCTCTTGTCGCCGTCCGTGAAAGGGGCATCATCTAACCTCGCGAACTCACAGGCGGATTCCCCGAACAACAGTCTCACCGACCGTAACAACAAGGCCCGCCCATACGAGCGCAGCTACGACATCTGTGGGACGGTGCAAACTATCCCCAATAACCTTATGTCTACTTACAAGGTGTTTAACGCTGCCGGTAAAATCGTAGAGTACGGCTATTACGACGCCGGGCGTGGTTACCTCGACATACACCCGGATGGCATAACGGACGGGGATACCCGTGTATCAGATATAACAGGCACGTCGGTTGCGGTGTACGCGCCGTATACGTCACCAAATAATACATCTACACCGCAGGTCATGGTTGGGGACCCCATAGAGCAAGGCCTATACATTACCGTAGAATCTAACGAAGTTGACGGCGTGGTTCTTAAAGCACCGAACGGTCTGGGCATTTCTTTCTCTTACATGTCCGGGTATCCGTCTTTGTCTGGAAACATTGGCACGATATATGACCCAACAGGTGGTTCGGATTTTTCCGGGGTGTTGGTGCCTAATGATACATTTTCGCTGGTGTCAGCGTGGACAAATACGGACGTCGACCTATCCGGCGGCGGGTATCAGGTGTTAAGCGTATCCGAAGGGACCGTTACCTTTATAGTGCCCGGTGGCCTCATTGGTAGGTGGCAAGAAATAAGACCCGGTTCATTTTTTCGAGGTGACGGAGAGGCGTCGCTGCAACCAGACAACACGTATGAGAAAACATTAACCGATTGGGTGTCTATAAACCGCACCGAGGTTGAGCGCATAGTCGCCAATATTGCGGCCGCAAATGGCATGTATAAAGACAACGGCAAGTCAAAAACACTGGCATCCGTTACCGCTGAGATACAGTACCAGCTACTTGATGAAAATAGCGTTCCTTACGGGCCAATATACACGGCGCAAGGAACCGTGTCCGGGCGTACACCGGACTACAACGGCGTCACTATTTACGCCGACCTGCCGGTTGTGTCACGGGTGCGGGTGCGCGCCAGAAGGGTAACAGACCTGGACTTTAATTTCGAGGGGTCTGTAGTCGATGAGATAACGTACGTTAACTTATACGGGCAAACACGTGACAACACCCCACACTACGGCAACAGAACAACAGTACACTCGATGCGCAAGCAGACCCCACGTGCTGCGGAAGTAAAGCAACCGCAGTTGCGTATGATTGCTACTGAAATGGTGTACAAATACCTCGGTAACGGTGTTTTCGAAGATACGATGACACCTAATACACAGGCTGTACAATCCCTCATCCGCCTGGCACGTGACCCGGACGTGGGTGGTTTAAACCTGACGGTACGCAACATGGATAAGTTACTTGCCGTGCAGAACGAGGTCGAAGCGTATTTCGGTGACAAACAGGCGGGGGAATTTTGCTACACGTTTGATGACTATAAAACCACCATGCAGGACATAGTTAGTACTATAGCAGACGCCATATTCTGCACCCCATATCGGCGTGGGGCGGATATCCTTCTCGATTTTGAGCGCCCTCGCATGGGCCCCGAGATGGTGTTCACCCACCGAAGCAAGGCCGGTACTTCTGAAAAGTGGACCAGAACATTTAACGATTCTCAGGTTTTTGACAGCCTTAAATTCTCGTACATAGACCCTAAGACGAACGTCAAAGAGACTATAACCATACCCGAAACCGGGGGCCTTAAAACGGAGACTTACGACTCAAAAGGAATCCGCAACTATAAGCAGGCTTTCTGGGCGGCAAACCGTCGCCACCAGAAGAACATTTTAAAGAAAATTTCGGTGTCGTTTACCGCCACTGAAGAGGGTATTTTTGCCCTTCCGAATCGTGCCGTTAGTGTGGTTAAGGGTTCGCGTATGGCGACCTACGACGGCTACGTAACCGCGGTAAACGGGCTCACCGTAGAACTGTCACAACCAGTTAAGTTCACCTCGGGAGATGACCATTCTTTGATTCTCAAGTTACGTGACGGCGGCGTGCAAAGTGTTAATGTAGTCCCTGGAGCGCACGACAGGCAGGTGATTATGACTTCTGTACCGCAGGAAGCCATTTACACTGGTAATAGCGCTTTGAAAACTGAATTTTCATTCGGCAACGAAGCAAGGCATAATGCTCAGATGATTCTTGTTTCTACGGTAGACCCTGGCGATGACAGAACAGTCAAAATAACCGGGTTTAACTATGACAAGGATTTCTATAAGTTTGACAACGTGCCTCCTTTCGGTCGTGCGTTCTCCAGCGGATTCGATAACGGTTTTAACTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
ebeaf5571042f97e74f28ad8ed72b203ed987a8c9d3ce274bf33a84bd436df6c
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,8192
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
The application of adaptively evolved thermostable bacteriophage YMFM0293 to control Salmonella spp. in poultry skin Lee,J., Kim,D. and Kim,M. 2023 — GenBank