Protein

View in Explore
Genbank accession
XXL68685.1 [GenBank]
Protein name
long-tail fiber protein
RBP type
TF
Evidence GenBank
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,66
TF
Evidence RBPdetect2
Probability 0,96
Protein sequence
MATLKQIQFKRSKVAGVNPTAAQLAEGELAINLKDRTLFTKDDLGNIISLGFAKGGDINGNVTHVGNYTQTGTFNLIGSQNVASGGYIEFAYKATGVGSWAGQHTAKAPIFMDISASTATSEYNPIIKQRFKDGTFSLGTLVSEGSLKIHYINESGDSKYWTFRRDGGFTVDSGGLAVSGGSITTSGNIAALGNITSPQINTKNIILDTKAFGQYDSQSLVNYVYPGTGEENGVNYLRKVRAKSGGTIYHEIASAQTGKNDEISWWTGNTLTTKLMGLRNDGAMVLRRSLAIGTITTDENTNNYGSPTPMGERYIALGDAATGLKYIKQGVYDLVGNWNSVASITPDSFRSTRKGIFGRSEDQGTTWIMPGTNAALLSVQTQADNNNAGDGQTHIGYNAGGKMNHYFRGTGQMNINTQQGMEINPGILKLVTGSNNVQFYADGTISSIQPVKLDNELFLNSSNNTAGLKFGAPSKVDGSRTIQWNAGTRAGQNKSYLTMKAWGNAFDPTAGNRETVFELYDGQGYHFYSQRLAPTGSETVGSLQFRISGALRVGGGIISAGSIVSESSLVANNGLSVNGQAKFGGTADALRIWNAEYGAIFRRSEAALHIIPTPKDAGESGGISNLRPLSISLNNGMVQMRHSVTLGDDGAGGNMITVDNDTKLVVVTSHSRISPNYRMQVGQAAYIDAECTDTVRPAGAGSFASQNNENVRAPFYMNINRTDTSTYVPILKQRYVQGNSCYSLGTLINGGNFRVHYHEGGDGSSTGATIKDLGWEFTRSGDFISPKRISAGGSVYLGTDGNITGGSGNFANLNSTIESLKTDIVSSYPIGAPIPWPTDTPPEGYAIMEGQTFDADLYPKLAAVYPSGALPDMRGQTIKGKPSGRAVLSTEADGVKSHSHSASASSTDLGTKTTSSFDYGSKTTSSFDYGTKTSNTTGNHNHTVSGNTSSAGAHQHARSGPQVTAAWADDLFRDGVTTIGANSYAKINSGITGSTLATKVGKTSNDGAHTHSWSGTTSSTGNHAHTVGIGAHTHSVGIGAHSHTVAIGSHGHTITVNATGNTENTVKNVAFNYIVRLA
Physico‐chemical
properties
protein length:1078 AA
molecular weight: 113749,36910 Da
isoelectric point:8,50301
aromaticity:0,07978
hydropathy:-0,36447

Domains

Domains [InterPro]
DC_0538
STR
1–1076
DC_0538
IPR051934
Unmapped
737–1078
IPR051934
SSF88874
STR
820–949
SSF88874 SSF88874
IPR037053
ATT
826–879
IPR037053
IPR011083
ATT
831–878
IPR011083
XXL68685.1
1 1078
Architecture
STR
ATT
STR
STR 1-825 | ATT 826-879 | STR 880-1077 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
XXL68685.1
1 1078
Domain Start End Length (AA) Confidence
N-terminal 1 300 300 0,1318
Central domain 301 499 200 0,2945
C-terminal 500 1078 578 0,8592
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-300
Central
301-499
C-terminal
500-1078

Taxonomy

  Name Taxonomy ID Lineage
Phage Escherichia phage Mizar
[NCBI] 		3434943 Viruses >
Host No host information

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
XXL68685.1 [NCBI]
Genbank nucleotide accession
PV714129.1 [NCBI]
CDS location
range 157504 -> 160740
strand +
CDS
ATGGCTACATTAAAACAGATACAATTTAAAAGAAGCAAAGTGGCAGGAGTTAATCCTACTGCAGCACAATTAGCCGAAGGCGAATTAGCGATAAACTTAAAAGATCGAACTCTTTTTACTAAAGATGACCTCGGTAATATTATTAGCCTAGGCTTTGCTAAGGGCGGGGATATTAACGGTAATGTAACTCACGTAGGTAACTATACTCAGACGGGTACATTTAATTTAATAGGCTCACAAAATGTTGCATCTGGTGGATATATCGAATTTGCTTATAAGGCCACCGGAGTTGGTTCTTGGGCAGGTCAACACACGGCAAAAGCCCCTATTTTCATGGATATTTCCGCATCAACCGCTACTTCGGAATATAATCCTATAATTAAACAGCGCTTTAAAGATGGAACTTTTTCATTAGGTACTTTAGTTTCTGAAGGTTCGTTGAAGATTCATTATATCAATGAATCTGGCGATTCGAAATATTGGACGTTTCGACGTGACGGCGGATTTACTGTTGACAGTGGAGGTTTAGCAGTATCAGGAGGTAGTATAACTACATCTGGAAATATTGCAGCTCTCGGAAATATTACTTCGCCTCAGATTAATACTAAAAATATTATTTTAGATACAAAGGCATTCGGACAATACGATTCACAATCTTTGGTTAACTATGTTTATCCTGGAACAGGCGAAGAAAATGGTGTAAACTATCTTCGTAAAGTTCGCGCTAAATCAGGCGGAACTATTTACCATGAAATCGCTTCAGCTCAAACTGGTAAGAATGATGAAATTTCTTGGTGGACCGGAAATACACTTACTACTAAATTAATGGGTCTTCGTAATGATGGCGCAATGGTATTACGTCGTTCACTTGCTATTGGCACAATTACCACTGATGAAAATACCAATAACTACGGCTCTCCTACTCCAATGGGAGAAAGATATATTGCTTTGGGTGATGCTGCCACTGGTTTAAAATACATTAAGCAGGGTGTTTATGATTTAGTAGGTAATTGGAATTCTGTCGCATCTATTACACCGGACAGTTTCCGTAGTACTCGTAAAGGTATATTTGGTCGTTCCGAGGACCAAGGCACAACTTGGATTATGCCTGGAACCAACGCCGCTCTTTTATCAGTTCAAACACAAGCTGATAATAACAATGCTGGAGACGGTCAAACACATATCGGGTACAATGCTGGCGGTAAAATGAACCACTATTTCCGCGGTACAGGTCAGATGAATATCAATACCCAACAAGGTATGGAAATTAACCCGGGTATTTTGAAATTGGTAACTGGCTCTAACAATGTACAGTTTTATGCTGACGGCACTATTTCTTCTATCCAACCTGTTAAATTGGACAACGAATTATTTTTAAATAGTTCTAATAATACTGCAGGACTTAAATTTGGCGCCCCTAGCAAAGTTGATGGCTCGAGAACTATCCAGTGGAACGCCGGGACCCGGGCAGGACAAAATAAAAGTTATTTAACTATGAAAGCTTGGGGTAATGCATTCGACCCCACTGCCGGTAATCGTGAAACCGTATTTGAATTGTATGACGGCCAGGGCTATCATTTTTATTCTCAACGTTTAGCTCCAACGGGTTCTGAAACTGTCGGTTCTCTCCAATTTAGAATTTCCGGCGCTTTACGTGTGGGTGGTGGTATTATATCGGCCGGTTCTATTGTTAGTGAATCAAGTTTAGTTGCAAATAATGGATTATCTGTAAACGGACAAGCTAAATTCGGTGGAACAGCAGATGCATTAAGAATTTGGAATGCTGAATATGGTGCTATTTTCCGTCGTTCAGAGGCGGCATTGCATATTATCCCGACTCCTAAAGATGCTGGAGAATCAGGTGGAATAAGCAATCTCCGTCCATTAAGTATTAGTCTTAATAATGGTATGGTACAAATGCGCCATTCTGTCACGTTAGGCGATGATGGCGCTGGCGGTAATATGATTACTGTGGACAATGATACCAAACTTGTTGTTGTTACTAGTCATAGTCGTATTTCTCCTAATTACCGTATGCAGGTAGGACAAGCAGCTTATATTGATGCTGAATGTACTGACACCGTTCGCCCGGCTGGTGCAGGGTCTTTTGCTTCACAAAATAATGAAAACGTTCGTGCTCCGTTCTATATGAATATTAATCGCACAGATACAAGTACTTACGTTCCTATTTTAAAACAACGTTATGTTCAAGGAAATAGCTGTTATTCTTTAGGTACTTTAATAAATGGCGGTAACTTCAGAGTTCATTATCATGAAGGTGGAGACGGAAGTTCAACAGGCGCAACTATAAAAGATTTAGGCTGGGAATTTACACGTTCTGGTGATTTTATATCTCCTAAGCGCATTTCTGCTGGGGGTTCAGTTTATTTAGGTACAGATGGTAACATTACTGGTGGTTCTGGTAATTTTGCCAACTTAAATAGTACAATTGAATCACTTAAAACTGATATTGTCTCAAGTTATCCAATTGGTGCTCCGATTCCTTGGCCTACTGATACACCTCCTGAAGGCTATGCCATAATGGAAGGTCAAACATTTGATGCTGACTTGTATCCTAAGTTAGCTGCAGTGTATCCTTCCGGCGCTCTGCCTGATATGCGTGGTCAGACGATTAAAGGTAAACCATCTGGGCGTGCTGTATTAAGTACAGAAGCAGACGGTGTTAAGTCACATAGCCATAGTGCAAGTGCATCAAGCACAGATTTGGGTACTAAGACCACTTCTAGTTTTGATTACGGTAGCAAAACGACTTCAAGCTTTGATTATGGTACTAAGACCAGTAATACCACTGGTAACCATAACCATACAGTGAGTGGTAATACTAGTTCCGCAGGAGCTCACCAACACGCGCGTTCAGGTCCTCAGGTCACTGCTGCATGGGCAGACGATTTGTTTAGAGACGGGGTTACTACGATAGGTGCAAACTCATATGCTAAAATTAACTCAGGTATCACTGGTTCGACTTTAGCAACTAAGGTCGGTAAAACATCAAATGACGGTGCCCACACCCATAGTTGGTCAGGAACTACTAGCTCTACGGGTAACCATGCTCATACGGTAGGTATTGGTGCTCATACCCATTCGGTAGGTATTGGTGCTCATTCTCATACTGTTGCAATTGGTTCCCATGGACATACAATAACTGTAAATGCCACAGGAAATACAGAAAACACAGTTAAAAACGTTGCTTTTAACTATATCGTTCGTTTAGCATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
875c3626e669a6296aa17f4b57e4db72643b1f78af847094fc3b828bd1c54290
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,6507
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Phage Mizar: an enterobacteriophage that infects UPEC strains from phylogroups A and B Valencia-Toxqui,G. and Ramsey,J. 2024-10-22 — GenBank