Protein
View in Explore- Genbank accession
- AGN33875.1 [GenBank]
- Protein name
- hypothetical protein
- RBP type
-
TF
- Protein sequence
-
MSEIKVDKVKGLQAGINGPEVSFSAAGDMTFDGDITSTGDITADDVTVTSSLRLPNYSTATLPTSPALGTVVYNTDDELIQIWIGTEWINAGGSAPVVSTGGTPSTAGGYTIHTFTSDDTFDLVDGESTLNVDVLLVGGGAGGGSRNAGPDSGGTDGGSGGGAGGWVQVANMSLTSPGNYPVVVGGGGAGANSPGNAQPGGPGATSEFNGLVAYGGGYGACGPGNRPGGPGGSGGGAGGGGGSPGNGGGATQPGAPGLSGTNGFGNPGGPNPNQASYTGSGGGGAAGAGAAGGNSRQAPGGNGRASTYSGSSVTYAGGGGGGGGYPSPSRGGNGGSGGGGHGGSSPQRTSTGQGEAGDANTGGGGGGGAGSSWPSGRAGNGGSGIVIVRYTTP
- Physico‐chemical
properties -
protein length: 393 AA molecular weight: 36083,77980 Da isoelectric point: 4,32456 aromaticity: 0,05344 hydropathy: -0,34402
Domains
Domains [InterPro]
DC_0634
STR
3–300
STR
3–300
IPR049304
STR
120–390
STR
120–390
1
393
Architecture
STR 3-390 |
Legend:
ATT
STR
RBD
CBM
LEC
ENZ
CHP
LNK
TAS
TTP
UNK
Unmapped
Taxonomy
| Name | Taxonomy ID | Lineage | |
|---|---|---|---|
| Phage |
Synechococcus phage S-CAM8 [NCBI] |
754038 | Uroviricota > Caudoviricetes > Pantevenvirales > Neritesvirus > Neritesvirus scam8 |
| Host |
Synechococcus sp. [NCBI] |
1131 | cellular organisms > Bacteria > Bacillati > Cyanobacteriota/Melainabacteria group > Cyanobacteriota > Cyanophyceae |
| Host |
Synechococcus sp. WH 7803 [NCBI] |
32051 | Bacteria > Cyanobacteria > Oscillatoriophycideae > Chroococcales > Synechococcus > |
Coding sequence (CDS)
Coding sequence (CDS)
Genbank protein accession
AGN33875.1
[NCBI]
Genbank nucleotide accession
HQ634178
[NCBI]
CDS location
range 30348 -> 31529
strand +
strand +
CDS
ATGTCTGAAATTAAAGTTGACAAAGTAAAAGGTCTTCAAGCAGGTATTAATGGTCCTGAAGTTAGTTTCAGTGCTGCTGGAGATATGACCTTTGATGGTGACATCACTTCTACTGGTGATATTACAGCAGATGATGTTACTGTCACTTCATCATTGCGTCTCCCTAATTACAGTACTGCGACTTTACCAACAAGTCCTGCTTTGGGTACGGTAGTTTATAATACTGATGACGAGTTAATTCAGATCTGGATTGGAACTGAGTGGATTAATGCTGGCGGTAGTGCACCTGTGGTATCAACTGGTGGAACTCCTAGCACTGCTGGTGGATACACTATTCATACATTTACTAGTGATGATACCTTTGATCTTGTAGACGGAGAAAGTACTCTAAATGTAGATGTTCTCTTAGTTGGTGGTGGTGCTGGTGGTGGTAGTAGAAATGCTGGACCTGATTCTGGCGGAACTGATGGAGGATCTGGAGGTGGTGCAGGCGGTTGGGTGCAAGTTGCTAACATGTCTCTCACTAGTCCTGGAAACTACCCTGTTGTCGTTGGTGGCGGTGGTGCTGGTGCCAATTCCCCAGGCAATGCACAACCTGGCGGACCTGGAGCAACATCAGAATTTAATGGTCTAGTAGCATACGGCGGCGGGTATGGTGCCTGTGGTCCTGGTAACCGTCCTGGTGGTCCTGGAGGATCTGGAGGTGGTGCAGGCGGTGGCGGTGGGTCACCTGGCAACGGTGGCGGTGCTACACAACCTGGAGCTCCTGGTCTTTCTGGTACTAATGGATTTGGCAACCCTGGTGGTCCTAACCCCAATCAGGCAAGTTATACGGGTTCTGGCGGCGGTGGTGCTGCTGGTGCTGGTGCTGCTGGTGGTAACAGTCGTCAAGCACCTGGTGGCAATGGACGTGCTAGCACCTACTCTGGATCTTCTGTAACCTACGCTGGAGGTGGCGGTGGTGGTGGAGGTTACCCATCTCCTTCTAGAGGCGGTAACGGCGGTTCTGGAGGTGGTGGACACGGCGGATCTTCACCCCAAAGAACTAGCACTGGGCAAGGTGAAGCAGGTGACGCCAATACTGGTGGCGGTGGAGGAGGTGGTGCAGGATCTTCCTGGCCCTCAGGTCGTGCTGGCAACGGCGGTTCTGGTATTGTTATTGTCCGTTATACAACACCTTAA
Genome Context
Genome Context
Tertiary structure
PDB ID
4440b47ee1ed6770e0569ad6766d5459a3ac2152fd88dd6505e5e9286f70d7d4
Model Confidence
Very high
pLDDT > 90
pLDDT > 90
High
90 > pLDDT > 70
90 > pLDDT > 70
Low
70 > pLDDT > 50
70 > pLDDT > 50
Very low
pLDDT < 50
pLDDT < 50
Literature
| Title | Authors | Date | PMID | Source |
|---|---|---|---|---|
| The Genome Sequence of Synechococcus phage S-CAM8 0608BI06 | Henn,M.R., Martiny,J., Weihe,C., Levin,J., Malboeuf,C., Casali,M., Russ,C., Lennon,N., Chapman,S.B., Erlich,R., Young,S.K., Yandava,C., Zeng,Q., Alvarado,L., Anderson,S., Berlin,A., Chen,Z., Freedman,E., Gellesch,M., Goldberg,J., Green,L., Griggs,A., Gujja,S., Heilman,E.R., Heiman,D., Hollinger,A., Howarth,C., Larson,L., Mehta,T., Pearson,M., Roberts,A., Ryan,E., Saif,S., Shea,T., Shenoy,N., Sisk,P., Stolte,C., Sykes,S., White,J., Haas,B., Nusbaum,C. and Birren,B. | 2011-09-23 | — | GenBank |