Protein

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Genbank accession
QQO38502.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence GenBank
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,73
TF
Evidence RBPdetect2
Probability 0,79
Protein sequence
MIENTLPRKLVLGTIAPGYTKLYIPHSSYEDKDVVGKAFWIDGTRFIDTNIDVLYTIVDNLKDNTEYKIIEGSYYDAMVDSELLDNKLGINMSEASSAKTLEYPSIHNVIVGAQEVDIGVGDPIITMDIQGDAQSIRIDKKLSSEDDTHWQPCYSGAPDAVSFTTGQGTYDFRVIGFIYMPDGVTTESSPYSTIKNVKVENMFRPPSAPENINFKVAKIMDGIERYDLQVSWDWDKGTGSSVREFVLYFVETSEYNKTQWRKASKINSGAAKASVITSFPFNKEYKFKVAAIAWGPADQALTDSNTASFKITSSTPLDSSFANETGIEVTYDHIKAYRDLAGRKEQTFRLDAKTGSLAIGKLDDQGHAPISVDPLSGNVNVDGAVISKTMYSASFVLSNLSGKDNPSIRTASKTGYGQSAQGMWMGYTNNDQKFKFDLGDSTKFIRWDGEKLLISGKVQIGTPGGNVDIDQGIQGNFVANIYKDAATQPSAPSGKDYPPAGWSDTPITNPQDLVWISTAVIDSKSNNVASNSTWSTPIQFTAKAGEDGVATVLIYRASTNQPTTPTNKSMPPAGWLTEPPARSVGQSIWVCSAERKGVEPNITGNWSEPAKFSGDQGDQGVPGKDGADGRTFYTWIKYADTVTGSGISNSPTGKRYIGIASNMASSTESNDPSDYTWALMKGDQGIPGTNGKDGKTTYTWIKYADDSSGRGFTDDPTGKAYLGIATNKTTQQESSNWRDYNWSKIKGEKGDTGVPGRNGKDGKTYYTWVRYADTAQGIGMSDSPDGKKYIGIAVNQLSPTESTNPNVYTWSKFEGDQGVPGRPGADGVTYYTWIKYADSADGSGISNSPSGKEYIGFAYNKTSAVESSNPADYTWSRIKGDKGDKGDPGRDGIPGAPGKDGVTTYTWIRYADTATGGGMSNTSAGKKYIGIAVNKTTPTESSNPTDYSWSKLEGDQGVPGKPGKDGKTYYTWIKYADNASGSGMSNSPSGKKYIGFAYNKTTPTESSRPQDYVWSKFAGDDGRPGRDGQDGEDGQDGRPGRDGKDGRPGRDGRPGTDGSRGPGFYAQPISRFSRFNTTSATKFFTDTFGKGPVEYDVLTQFNPSNPASAETRQWIKGSWQSAAMLVHGNMIVNGSITAQKIIASNAFLQQIGVNVIYDNAAAQSSNPESRYKMKIDLSRGSIHIR
Physico‐chemical
properties
protein length:1185 AA
molecular weight: 128339,04170 Da
isoelectric point:5,61208
aromaticity:0,10295
hydropathy:-0,64793

Domains

Domains [InterPro]
IPR057550
STR
10–94
IPR057550 IPR057551 DC_1191 DC_1971 DC_1191
IPR057551
STR
102–190
IPR057551 IPR057552 IPR057549 DC_1971 IPR057549
IPR036116
STR
228–292
IPR036116 PTHR24637
QQO38502.1
1 1185
Architecture
STR
STR
STR
STR
STR 10-94 | STR 100-190 | STR 193-550 | STR 576-1185
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
QQO38502.1
1 1185
Domain Start End Length (AA) Confidence
N-terminal 1 253 253 0,8114
Central domain 254 1100 848 0,0682
C-terminal 1101 1185 84 0,3296
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-253
Central
254-1100
C-terminal
1101-1185

Taxonomy

  Name Taxonomy ID Lineage
Phage Vibrio phage VPG01
[NCBI] 		2798882 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Vibrio parahaemolyticus
[NCBI] 		670 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Vibrionales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
QQO38502.1 [NCBI]
Genbank nucleotide accession
MW398869.1 [NCBI]
CDS location
range 92289 -> 95846
strand -
CDS
ATGATTGAGAATACACTACCAAGAAAACTAGTTCTAGGTACTATCGCTCCGGGATATACAAAACTGTATATCCCTCATTCTAGCTACGAGGACAAAGACGTAGTTGGTAAGGCATTTTGGATAGATGGGACTAGATTTATAGATACAAATATAGATGTTTTATATACTATAGTTGATAACTTAAAGGACAATACAGAATATAAAATCATCGAAGGGTCTTACTATGATGCTATGGTAGACTCAGAGCTTCTGGACAACAAGCTAGGTATTAATATGTCAGAAGCATCTTCAGCAAAAACGTTGGAGTACCCTAGCATTCATAATGTTATAGTAGGAGCCCAAGAAGTAGATATTGGTGTTGGTGATCCTATTATAACTATGGATATACAAGGAGACGCTCAATCTATAAGAATAGATAAGAAGCTGTCTTCTGAGGACGATACTCACTGGCAACCTTGCTATAGTGGTGCTCCAGATGCGGTATCTTTTACTACAGGGCAAGGTACATATGACTTTAGGGTCATAGGTTTCATTTATATGCCTGATGGGGTTACTACAGAATCCTCACCTTATAGTACAATAAAAAATGTTAAAGTAGAGAACATGTTTCGCCCACCTAGTGCTCCGGAGAATATTAATTTTAAAGTAGCAAAAATAATGGATGGGATAGAGCGTTACGACTTACAAGTAAGTTGGGACTGGGATAAAGGTACTGGCAGTTCTGTCAGAGAATTTGTTCTTTACTTTGTAGAGACTAGCGAGTATAATAAAACTCAATGGAGAAAGGCGAGCAAAATTAACAGTGGTGCTGCTAAAGCATCAGTAATTACAAGTTTTCCTTTTAATAAAGAATATAAATTTAAGGTAGCTGCTATAGCATGGGGGCCTGCTGATCAAGCACTAACCGACTCTAATACCGCATCCTTTAAAATTACAAGCTCAACCCCTCTAGACTCTTCTTTTGCTAATGAGACTGGTATAGAAGTCACTTATGACCATATCAAGGCATATAGAGACCTAGCGGGTAGAAAGGAGCAAACATTTAGATTAGATGCAAAAACTGGTTCATTAGCTATTGGTAAGTTAGATGACCAAGGTCATGCGCCTATTTCTGTTGACCCTTTAAGTGGCAATGTCAACGTAGATGGTGCGGTAATATCAAAGACAATGTACTCAGCTTCTTTTGTATTATCTAATTTATCTGGTAAAGATAATCCTAGTATAAGAACAGCATCTAAGACAGGGTATGGACAATCCGCACAAGGTATGTGGATGGGTTACACTAACAATGACCAGAAGTTTAAGTTTGACTTAGGCGATTCTACCAAGTTTATTAGATGGGATGGGGAAAAGCTACTTATATCTGGTAAAGTACAGATTGGTACACCAGGTGGTAACGTAGATATAGACCAAGGTATTCAGGGTAACTTCGTTGCTAATATATATAAAGATGCAGCCACACAACCTAGCGCACCTTCAGGTAAGGACTACCCACCAGCGGGTTGGAGCGACACTCCAATAACTAACCCACAGGACTTGGTATGGATTTCTACCGCTGTTATAGACTCGAAAAGTAACAATGTAGCATCTAACAGTACGTGGTCTACTCCAATACAGTTTACTGCAAAAGCAGGTGAAGATGGTGTAGCTACAGTATTAATATACCGAGCCAGTACTAATCAACCTACTACTCCTACTAACAAGTCAATGCCTCCAGCGGGTTGGCTAACAGAGCCACCGGCTAGATCAGTTGGCCAATCTATCTGGGTATGTAGCGCAGAAAGAAAAGGTGTAGAACCTAACATAACAGGCAACTGGTCAGAGCCTGCTAAGTTTAGTGGAGACCAAGGTGATCAAGGTGTCCCAGGTAAAGACGGTGCAGACGGGCGTACATTCTATACTTGGATTAAATACGCCGATACTGTAACAGGTTCGGGGATTAGTAACTCGCCAACTGGAAAACGTTATATAGGTATTGCTAGCAACATGGCTAGTTCTACTGAAAGTAATGACCCTTCTGATTATACTTGGGCACTTATGAAAGGCGATCAGGGTATTCCAGGTACTAACGGTAAAGATGGTAAAACTACTTATACTTGGATTAAGTATGCTGATGATAGCTCAGGAAGAGGTTTCACAGATGATCCTACCGGTAAAGCTTACCTAGGTATAGCTACTAACAAGACTACACAACAAGAAAGCTCTAACTGGCGCGACTATAATTGGAGCAAGATCAAGGGTGAGAAAGGTGATACTGGAGTTCCTGGTCGTAACGGTAAAGACGGTAAAACATATTATACTTGGGTACGCTACGCAGATACTGCTCAAGGCATAGGTATGTCAGATAGCCCTGATGGTAAGAAATATATCGGTATAGCTGTTAACCAACTGTCGCCAACAGAAAGTACTAACCCTAACGTGTATACATGGAGTAAGTTTGAAGGTGATCAAGGGGTTCCAGGTCGTCCTGGGGCAGATGGAGTTACTTACTATACTTGGATTAAGTATGCTGATAGTGCGGACGGAAGTGGTATTTCTAATAGTCCTAGCGGGAAAGAGTACATCGGATTTGCATATAATAAGACTTCTGCTGTAGAAAGTAGTAATCCTGCGGACTATACATGGAGTCGCATTAAAGGTGACAAAGGGGATAAGGGAGATCCTGGTCGTGATGGTATTCCTGGTGCTCCTGGTAAAGACGGTGTAACTACTTATACTTGGATTCGATACGCTGATACTGCTACAGGTGGTGGAATGTCTAATACTTCTGCTGGTAAGAAGTATATAGGTATTGCTGTGAATAAAACAACACCTACTGAAAGCAGTAATCCTACTGACTATTCTTGGAGTAAGTTAGAGGGTGATCAAGGTGTCCCTGGCAAGCCAGGTAAAGACGGTAAAACATATTATACTTGGATTAAATATGCCGATAATGCTAGTGGTAGTGGTATGTCTAATAGCCCTAGCGGTAAGAAGTATATAGGTTTTGCATATAATAAAACCACACCTACAGAAAGTAGTAGACCTCAAGACTACGTATGGTCTAAATTTGCAGGTGATGATGGACGTCCAGGTAGAGACGGACAAGATGGTGAAGATGGGCAAGATGGTCGTCCAGGTAGGGATGGTAAAGACGGTCGTCCAGGTAGAGATGGTAGGCCTGGTACTGATGGTAGTAGAGGCCCAGGCTTCTATGCTCAGCCCATAAGTCGTTTCTCTAGATTTAATACTACGTCTGCAACTAAGTTCTTTACCGATACATTTGGTAAAGGTCCAGTAGAGTATGATGTACTAACTCAATTTAATCCTAGCAACCCTGCCTCAGCAGAGACGCGTCAATGGATTAAAGGTAGTTGGCAAAGTGCCGCCATGTTAGTACATGGTAATATGATTGTTAATGGTTCTATTACTGCTCAGAAAATCATTGCTAGCAATGCCTTTTTACAACAAATCGGTGTTAATGTTATATATGATAATGCAGCAGCACAATCATCAAACCCTGAATCTCGTTATAAAATGAAGATAGACTTGTCTCGCGGGTCTATACATATAAGATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
4960bda9cf28746b4b4bfbbd346e9069fbfb9b34ad7154f2480f7ab1cbcfa160
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,6831
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Complete Genome Sequence of Vibrio parahaemolyticus Bacteriophage VPG01 Kim,B.S. and Kim,M. 2012-06-15 — GenBank