Protein

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Genbank accession
YP_009799369.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence UniProt/TrEMBL
Probability 1,00
TF
Evidence GenBank
Probability 1,00
TF
Evidence Phold
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
TF
Evidence RBPdetect
Probability 0,88
Protein sequence
MADLVTEWFMEPSVRTNYRTMVYYKGDGQDTFEINFDGGFIYKEDVKAFSVKDDTRERKNHKVTFVNGSVSRVKLDSAIPKGWTVCIYRDTPKAKPLAQFTDGAIINEANLDRNAQQAMFAVSEMVDRFDSTVESVEAALQQVYEANKKADQAINTANGAKATADSAVRIANGAVTTANEAKQSAANANTTANGAVKTANEAKSIAQGLDGQIKQANTTANNAVNKADSAIATANEAKATANGIDAKATKALADSAQALKVANGIDGKATQALNNSKEALDKANAALQSQGIAKELTDRVEGYPTSIDVRWKGNHVFQQGITFNKDNDAGARGVVELWNEKELRFGARIGGNWSVARFVVEEGELYLPVGKVYRVGSLNPDFGYSVITRNTGYYSRYRMINSTNNDTVELIHGPDNRPYLESRSGSNGAIQSQWYFPYQGGNVLTDKYWHRFAQGASETNMFSPDKQTYFNIRNDRAGVYNAGASRWNYMYTMNAFKVFGRSTYTGLELTRGNGTYLRLETNEDFLTIVQRNANDTNNGVVAFPKPTLSSDTVVYSSMVYGKDQVYTKAQSDANYIKRREPIKSVKGNWDVGSTLTIPTDLRGKVITLQRPYYGENENGIASMVCPLVSGLQELNDADGGAYWWLRFTYTESSTTIKIVSGHYARLDAIYYRDA
Physico‐chemical
properties
protein length:674 AA
molecular weight: 74286,62440 Da
isoelectric point:8,08648
aromaticity:0,10089
hydropathy:-0,53234

Domains

Domains [InterPro]
DC_1152
ATT
1–664
DC_1152
IPR005604
ATT
19–133
IPR005604
YP_009799369.1
1 674
Architecture
ATT
ATT 1-664 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_009799369.1
1 674
Domain Start End Length (AA) Confidence
N-terminal 1 217 217 0,9454
Central domain 218 416 200 0,3198
C-terminal 417 674 257 0,8084
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-217
Central
218-416
C-terminal
417-674

Taxonomy

  Name Taxonomy ID Lineage
Phage Salmonella phage vB_SpuP_Spp16
[NCBI] 		2081603 Uroviricota > Caudoviricetes > Autographivirales > Melnykvirinae > Panjvirus
Host Salmonella enterica
[NCBI] 		28901 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_009799369.1 [NCBI]
Genbank nucleotide accession
NC_047941.1 [NCBI]
CDS location
range 35190 -> 37214
strand +
CDS
ATGGCAGATTTAGTAACAGAATGGTTTATGGAACCATCTGTACGTACTAATTACCGTACTATGGTATACTACAAAGGTGATGGGCAAGATACCTTTGAGATTAACTTTGATGGTGGATTCATCTATAAAGAAGATGTTAAAGCTTTCTCAGTTAAAGATGATACACGTGAACGTAAGAACCATAAAGTTACTTTTGTTAACGGTTCTGTAAGCCGTGTTAAATTAGATAGCGCTATACCTAAAGGTTGGACGGTATGTATCTACCGTGATACACCTAAAGCTAAGCCTTTAGCACAGTTTACAGATGGCGCAATTATTAACGAAGCTAACCTAGACCGTAACGCACAACAAGCTATGTTCGCTGTGTCAGAGATGGTTGACAGATTTGACTCTACAGTTGAATCGGTAGAGGCTGCATTACAACAGGTATACGAAGCTAATAAGAAAGCTGACCAAGCTATTAACACTGCTAACGGTGCTAAGGCTACGGCAGATAGTGCTGTACGTATTGCTAATGGTGCAGTTACTACTGCTAATGAAGCTAAACAGTCAGCAGCAAATGCAAATACAACTGCTAATGGTGCTGTTAAAACTGCAAACGAAGCTAAGAGTATTGCTCAAGGTTTAGATGGTCAAATTAAACAGGCAAACACTACAGCTAATAATGCAGTTAATAAAGCTGACTCTGCTATTGCAACAGCTAATGAAGCTAAAGCAACGGCTAATGGTATTGATGCCAAGGCTACTAAAGCGCTTGCTGATTCAGCGCAAGCATTGAAAGTAGCTAATGGTATTGATGGTAAAGCTACACAGGCACTAAATAACTCTAAGGAAGCGTTAGATAAAGCTAATGCAGCGTTACAGTCACAAGGTATTGCTAAGGAGTTAACTGACCGTGTAGAAGGATACCCAACATCTATTGACGTTAGGTGGAAAGGAAACCATGTATTCCAACAAGGTATTACATTCAATAAGGATAATGACGCAGGTGCCAGAGGTGTAGTAGAGCTATGGAATGAGAAAGAGTTACGTTTTGGTGCGCGTATTGGTGGTAATTGGAGTGTGGCCCGGTTTGTTGTAGAAGAGGGGGAGCTTTACTTACCAGTAGGTAAGGTATACAGAGTTGGTTCACTAAATCCGGACTTTGGGTATTCTGTTATTACTCGTAACACAGGTTACTATAGCCGTTATCGTATGATTAATAGTACTAACAATGATACAGTAGAACTGATCCATGGCCCGGATAATAGACCGTACTTGGAGTCGCGGTCAGGTTCCAACGGCGCTATACAGTCACAGTGGTACTTTCCATATCAAGGTGGTAACGTTTTAACTGATAAATATTGGCACAGGTTTGCACAAGGCGCATCGGAAACAAATATGTTCTCACCGGATAAGCAAACATATTTCAATATTAGAAACGATAGGGCTGGTGTTTATAATGCAGGTGCTTCAAGATGGAACTATATGTATACTATGAACGCTTTCAAAGTGTTCGGTAGAAGTACATATACTGGACTGGAATTAACAAGAGGTAACGGAACATATCTTCGTTTAGAAACTAACGAGGATTTTCTTACTATAGTACAAAGAAACGCAAATGACACGAATAACGGTGTTGTTGCGTTCCCTAAACCGACATTATCAAGTGACACTGTAGTATACAGTAGTATGGTTTACGGTAAAGACCAAGTATACACCAAAGCACAATCTGATGCTAACTACATAAAGCGAAGGGAGCCTATTAAGTCTGTTAAAGGAAATTGGGACGTTGGTTCTACGCTAACTATACCCACAGACTTACGAGGTAAGGTCATAACTTTACAGCGTCCATATTACGGTGAAAATGAAAATGGAATTGCCTCTATGGTGTGTCCTTTGGTTAGTGGCCTACAGGAACTAAATGACGCTGACGGTGGGGCTTATTGGTGGTTACGTTTTACGTACACAGAAAGTTCCACTACTATAAAGATTGTGTCTGGTCATTATGCTAGACTTGATGCTATATATTATAGAGATGCATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
dce5d64b81b2fb82bdc3df81c21e9512998e02d3d8b50873d18a800cbdda3c7c
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,6540
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Complete genome sequence analysis of a novel Salmonella phage Spp16 Zhao,F., Sun,H., Ren,H. and Tong,Y. 2019-02-14 — GenBank