Protein

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Genbank accession
YP_009205945.1 [GenBank]
Protein name
tail fiber protein; host specificity
RBP type
TF
Evidence RBPdetect
Probability 0,88
Protein sequence
MAVVGIPGWIGTSAVAETGQRWMSAASRELRLGNPSWMSQFAGRSREIIHTLGADHNFNGQWFRDRCFEAGGAPIVFNITGNLVSYTKDVPLFFMYGDTPNEYVTLNIHGNVHMWGRGGNGSVNGSPGTNGGDVIQNDIGGRLRIWNYGVIASGGGGGGAVSLQNSWAANATAGGGGGRPFGLGGGGVNWPGGNASYDGPGGGGNTSQFGGGNGGDAGGAGGDGWGNHLSRSGGGAPGRAVFGSSPTWGATGAIYGSWI
Physico‐chemical
properties
protein length:259 AA
molecular weight: 26108,23210 Da
isoelectric point:6,96502
aromaticity:0,10425
hydropathy:-0,26564

Domains

Domains [InterPro]
IPR048291
ATT
1–42
IPR048291 IPR007932
DC_2135
STR
1–142
DC_2135
YP_009205945.1
1 259
Architecture
ATT
STR
RBD
ATT 1-42 | STR 43-142 | RBD 143-259
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Taxonomy

  Name Taxonomy ID Lineage
Phage Escherichia phage vb_EcoM-VR5
[NCBI] 		1567026 Uroviricota > Caudoviricetes > Pantevenvirales > Tevenvirinae > Dhakavirus
Host Escherichia coli
[NCBI] 		562 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_009205945.1 [NCBI]
Genbank nucleotide accession
NC_028881 [NCBI]
CDS location
range 160306 -> 161085
strand +
CDS
ATGGCAGTAGTAGGAATTCCTGGTTGGATTGGAACTTCAGCGGTTGCTGAAACGGGCCAGCGTTGGATGTCCGCAGCCTCTAGAGAATTACGTCTAGGGAACCCGTCTTGGATGTCCCAATTCGCGGGCCGCTCAAGAGAAATTATTCACACACTTGGAGCAGACCATAACTTTAATGGTCAATGGTTCCGTGACCGTTGTTTTGAAGCCGGCGGTGCTCCTATAGTGTTTAATATCACAGGCAACTTGGTATCATATACTAAAGATGTTCCATTGTTCTTTATGTACGGTGATACCCCTAACGAATATGTTACTTTGAATATTCATGGCAACGTTCATATGTGGGGCCGAGGTGGTAATGGTAGCGTAAATGGAAGCCCAGGCACTAATGGTGGCGACGTAATCCAGAATGATATTGGTGGACGACTTCGCATTTGGAATTACGGTGTGATAGCCTCCGGCGGCGGCGGCGGTGGTGCAGTATCATTACAGAATAGTTGGGCTGCAAATGCTACAGCAGGTGGCGGCGGCGGACGACCATTTGGTCTCGGCGGTGGTGGCGTTAATTGGCCCGGCGGCAATGCTAGTTATGATGGTCCAGGTGGTGGTGGTAATACAAGTCAATTTGGCGGTGGTAATGGAGGTGATGCAGGTGGCGCTGGAGGCGACGGATGGGGTAATCACTTATCTAGATCTGGGGGTGGTGCTCCTGGTAGAGCAGTATTCGGAAGTTCACCGACATGGGGTGCTACAGGCGCAATCTACGGCTCCTGGATATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
ac69e24d50f33b8dab3ac69a0ba2ca8ba850ab30e106376a6515a2cc071cca1e
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,8586
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
VR bacteriophages - a small but diverse group of low-temperature viruses Kaliniene,L., Meskys,R., Simoliunas,E., Zajanckauskaite,A. and Truncaite,L. 2015-03-10 — GenBank