Protein

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Genbank accession
YP_010113269.1 [GenBank]
Protein name
virion structural protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
Protein sequence
MDTNEQNKLSNIFINTFNGGMNSDTSFASMPSGQYSHAVNIRQINGKDYFDNNKALVEEKQGIISPITYKNKEIVFEGSGHEFLYILNTFTVNNKLIVLYKSRLRRRDGKDYYLISVATGQDEDKDDKYPGKILMNRKFSICDLDTPELYKDVKNISASIHRETDNIINLYICDGIHQLMLINISDNARLYISDISYISTHDYEYIIHTKYIQNNNYIPDKPIIMGQTSGNLKTGLVQYACILYKKHGIQSCLSLLTNKIQIISNNRTKKQGCAENTDSGIGIILKVEINDNYKKLFDMCKIYRIHYIKPGQNAEVYTICDTKISRDITYTDTGNSTLEKLKLEELQSTYSQRITPGVFTYNSLYGIVGDITDSTTISDIKNTSFLTYSLCIGKKEKEKTSLETFTIPDNPGYTYDNKAIYTIFKNDGLVIKYDLTDVQDYDGVRSGIINNYPGGDTGYRYLYRQHGRYEDIEIARIKSGESQLSRIFGYRCYARTDVMCTWGKYAGPTLPNEDFNDYITTYGHKLELFNEIDDNFLKNNKFCTIDTGTYYENPYDGHEHRYVYEYTHSKIKYGIFKVIGDDVNINKHNMGLFTFDYRVLSKLDNPTTKFNITGKYIYTDDNGDERVGYYGCNISKNGNIVLINSDKKLRHVGTGFWCKYKMVLDTSDTDAMMYGKFNITIGDKKLSVYFDTTLEYIIPPGYTVPCTCGGKPIDIIIDNVYANKDQVLKLIKKKYGEDDIVIMKGSDINKDLSPSEVENVVPFDKNGEIDPFNDYNNIVGGFSNCVLWRFIILNSLWRKTEEDTTVNDSSIEDKYYYLNKTRDGKYSLYDYSASGSVNGLIKEKGVQIKFPCDAGYNDIFVSSLFRTLMPGETYRYGIVFYNKEGKRSNVHWIADIKAPNILEDIYTSGIHNGKLPIIGIQFSVILTEQLIKNNICKYIIVRCKKRDIYTRILGLVVVSNVMRLDQLVNNGGDDISAENRLYSPYYSLGFITINNICIGLGYGIPPWPNGCYPGTGEVKQNVPKLYQLYSPEINHINDSIYTKITGSVQNMSVKYYIRSACDLLYADDNWGSDIHLDKKLNDVNRNDLAKGIFNVINRSKIKCRGAEKQSQYLYNYDIFNAGNVKYDTVELQKVNQVKELKWNDAFTEVKRNGTVVNDAIKKYTNFVLAVGSNSFVNFASFGKYDGDPGDDSSALFLFNFKWNTGISYNWKNFREYTWKDNNLHIEAYGPLCVGGRSFIALAKTPLTPLASLRYLCSYICDLTHEVQQFSGKTKDEMLYDIYYDFGNSVNIDKKNYVFDGLHYFQKYNIISAHKIYDFTDYYNNLQSTQIRNKIPMYSLVNEKLTYGEVNNDLFTSVEIQPYSLENLGAQENQAYEYASIYSDNDFSNSVFNAESYEESVVNFPQRIFYSNPKTNGENTDNWHIYKVANFIDGNDKLGRITDLFTYDNKTYVFLENGIGTLSINEKQTMQNTSGENIIIGTSDILKNINYISSSYGMRYMDMCKIGTSDAIYWFDYYNNCICQIKTKINSFDTLNCINYSSLTNVSNIINNYYDVQIKDGAEKRHILPPKIVFDNMRSELYFGNLKVNDLYYSIIFNTKYSFAQTLISEYTDAEVEKHKFLGFYNILGYVCKFELIDDGNYTNKGIIQKYSINRDNSDIQYLKPMSIQFVINNDTNSVKIFDNQLIQYSNRYGTDTLENNQFFKDRKLKVFTDMYKGESYVSDTDTFVTDREGSVCYPIPRTCDDKNTSTDVYMNEYGRRMRGRWMVETYTDLNPSKKSSIYNIITKTRKSYN
Physico‐chemical
properties
protein length:1793 AA
molecular weight: 206578,34530 Da
isoelectric point:6,09737
aromaticity:0,13107
hydropathy:-0,49091

Domains

Domains [InterPro]
IPR057889
STR
14–435
IPR057889 IPR057889 DC_1659
IPR057888
RBD
1662–1742
IPR057888
YP_010113269.1
1 1793
Architecture
STR
STR
RBD
STR 14-435 | STR 1050-1593 | RBD 1622-1793
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_010113269.1
1 1793
Domain Start End Length (AA) Confidence
N-terminal 1 326 326 0,2310
Central domain 327 551 226 0,7153
C-terminal 552 1793 1241 0,2677
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-326
Central
327-551
C-terminal
552-1793

Taxonomy

  Name Taxonomy ID Lineage
Phage uncultured phage cr130_1
[NCBI] 		2772092 Uroviricota > Caudoviricetes > Crassvirales > Oafivirinae > Chuhaivirus
Host No host information

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_010113269.1 [NCBI]
Genbank nucleotide accession
NC_055901 [NCBI]
CDS location
range 34764 -> 40145
strand -
CDS
ATGGATACTAATGAACAAAACAAGTAGAGCAATATTTTTATAAATACGTTTAATGGCGGAATGAATTCTGACACATCGTTTGCTTCTATGCCAAGTGGACAATATTCGCATGCTGTAAATATTAGACAAATTAACGGAAAAGATTATTTCGATAATAATAAGGCCTAGGTAGAAGAAAAGCAGGGAATAATATCTCCAATAACATATAAGAATAAAGAGATTGTGTTTGAAGGATCAGGACATGAATTTTTATATATATTAAACACGTTTACTGTAAATAATAAACTTATTGTTTTATATAAATCTAGACTTAGAAGAAGGGACGGTAAAGATTATTATCTAATAAGCGTCGCTACTGGACAGGATGAAGACAAAGATGATAAATATCCTGGTAAAATATTGATGAACAGAAAATTTAGCATCTGTGATCTTGATACACCAGAATTATACAAAGATGTAAAAAATATATCTGCATCTATTCATAGAGAAACCGATAACATAATAAATCTATATATTTGTGATGGAATACATCAGTTGATGTAGATTAATATAAGTGATAATGCAAGATAGTATATCTCAGATATATCTTATATATCAACACATGATTATGAATATATAATACACACTAAATATATACAAAACAATAATTACATTCCAGATAAACCTATTATCATGGGCCAGACATCTGGAAATCTAAAAACAGGATAGGTTCAATATGCATGTATATTATACAAAAAACACGGGATTCAAAGCTGCTTATCATTATTGACCAATAAAATACAAATAATATCTAACAATAGAACTAAAAAACAAGGATGTGCAGAAAATACCGACAGTGGAATAGGAATTATTTTGAAGGTTGAAATCAATGATAATTATAAAAAATTATTCGATATGTGTAAGATATACCGAATACATTATATAAAACCTGGACAAAATGCAGAAGTATATACCATATGTGATACTAAAATATCTAGAGACATTACGTATACAGATACTGGAAATTCTACATTAGAAAAGCTTAAACTAGAAGAACTACAATCTACTTATTCACAACGCATTACACCTGGCGTATTTACATATAATAGTTAGTATGGAATTGTCGGAGATATTACTGACAGTACAACGATATCTGATATAAAAAATACATCATTTTAGACGTACTCATTGTGTATCGGTAAAAAAGAAAAAGAAAAGACGTCGCTTGAAACATTTACTATACCAGATAACCCTGGATACACATATGATAATAAAGCTATATATACAATATTTAAAAATGATGGATAGGTTATTAAATACGATTTAACAGACGTTCAGGATTATGATGGCGTTAGATCTGGAATTATAAATAATTACCCTGGTGGGGATACTGGGTACCGATATTTGTATCGTCAACACGGTAGATATGAAGATATAGAAATTGCACGTATAAAATCTGGAGAATCTCAATTATCACGTATATTTGGTTATAGGTGCTATGCTCGTACAGATGTTATGTGTACTTGGGGTAAATACGCTGGACCAACACTACCTAATGAGGATTTCAATGATTATATAACTACATATGGTCATAAGTTAGAATAGTTTAATGAGATTGATGATAATTTTTTAAAAAATAATAAATTCTGTACAATAGATACTGGAACATATTATGAAAACCCATATGACGGACATGAACACAGATATGTATACGAATACACTCATAGTAAAATAAAATACGGTATATTTAAAGTTATTGGAGATGATGTAAATATTAACAAACATAATATGGGATTATTTACATTTGATTATAGAGTGTTGAGTAAATAGGATAATCCAACAACAAAATTTAATATAACAGGAAAATATATATATACTGATGATAATGGAGATGAGCGTGTTGGATATTATGGATGTAATATTAGTAAAAACGGAAATATTGTATTAATTAATAGTGACAAAAAATAGCGACACGTTGGTACTGGTTTTTGGTGTAAGTATAAAATGGTTTAGGATACATCGGATACTGATGCAATGATGTATGGAAAATTTAATATTACAATAGGTGACAAAAAGTTATCTGTTTATTTTGATACTACTTAGGAATACATAATTCCACCAGGATATACAGTTCCGTGTACTTGTGGAGGTAAACCTATAGATATCATCATAGATAATGTATATGCAAATAAAGATCAGGTCTTAAAATAGATAAAAAAGAAATACGGTGAAGATGATATAGTCATAATGAAAGGTTCTGACATAAATAAAGATTTATCGCCATCTGAAGTAGAAAACGTCGTTCCGTTTGACAAAAATGGAGAAATAGATCCATTTAATGATTATAATAATATAGTTGGCGGATTTTCTAATTGTGTATAGTGGAGATTTATCATACTAAATTCTTAGTGGAGAAAGACCGAAGAAGATACTACCGTTAACGATTCTTCAATAGAAGATAAATATTATTATTTAAATAAGACTCGTGATGGAAAATACTCATTATATGATTATTCTGCATCTGGATCTGTTAATGGATTGATAAAAGAAAAAGGTGTACAAATTAAATTTCCATGTGATGCAGGATACAATGATATATTTGTATCTAGTTTATTTAGAACTCTCATGCCAGGAGAGACCTATAGATATGGTATTGTATTTTATAATAAAGAAGGAAAACGAAGTAATGTTCACTGGATTGCCGATATAAAAGCACCTAATATACTAGAAGATATATATACAAGTGGGATACATAACGGGAAGCTACCAATAATAGGTATCCAGTTTAGTGTTATTTAGACAGAGCAACTTATAAAAAATAACATATGCAAGTACATCATAGTTAGGTGTAAAAAACGTGATATTTATACAAGAATATTAGGATAGGTGGTTGTTAGTAATGTAATGCGATAGGATCAATAGGTAAATAACGGAGGTGATGATATTAGCGCTGAAAACCGTTTATACAGTCCATATTATTCATTAGGTTTTATAACTATTAACAATATATGCATAGGACTCGGTTATGGTATACCGCCATGGCCAAATGGATGTTATCCTGGAACAGGTGAAGTAAAACAGAATGTTCCTAAATTATATCAACTATATTCTCCCGAAATCAATCACATAAATGATAGCATATATACAAAAATAACAGGATCTGTACAAAATATGTCTGTAAAATATTATATAAGATCAGCATGTGATCTATTATATGCTGATGATAATTGGGGCAGTGACATACATTTAGATAAAAAACTCAACGATGTTAATAGAAATGATCTAGCAAAAGGAATATTTAATGTAATCAACAGAAGCAAAATTAAATGTCGTGGCGCAGAAAAACAATCACAGTATTAGTATAATTACGATATCTTTAATGCTGGAAATGTTAAATACGATACCGTAGAACTTCAAAAAGTAAATCAAGTCAAAGAACTTAAATGGAATGACGCGTTTACAGAAGTAAAACGTAACGGAACTGTTGTGAATGATGCTATAAAAAAATACACAAATTTTGTTTAGGCTGTTGGATCAAACAGTTTTGTAAATTTTGCTTCATTTGGTAAGTATGATGGGGATCCAGGAGATGATTCGTCTGCACTATTTTAGTTTAATTTTAAATGGAATACTGGTATAAGTTATAACTGGAAAAACTTTAGAGAATATACGTGGAAGGACAATAATCTTCATATTGAAGCTTATGGGCCATTATGTGTAGGAGGAAGATCATTTATAGCTCTTGCAAAAACACCCCTTACTCCACTGGCTTCTTAGCGATACTTATGTAGTTATATTTGTGACTTAACACATGAAGTACAACAATTCTCTGGAAAAACAAAAGACGAAATGTAGTATGATATATATTATGATTTCGGAAATTCTGTTAATATTGATAAAAAAAATTATGTATTTGATGGATTACATTACTTTCAAAAATATAATATAATATCTGCACACAAAATATATGATTTTACTGACTATTATAATAATCTACAGTCAACGCAAATTAGAAATAAAATTCCAATGTATAGTTTAGTTAATGAAAAGTTAACCTATGGAGAAGTTAACAATGATTAGTTTACTAGTGTAGAAATTCAACCTTATTCATTGGAAAATTAGGGTGCGCAAGAAAATCAGGCGTATGAATATGCTTCAATATATTCAGACAACGATTTCTCAAATAGTGTTTTTAATGCTGAATCATATGAAGAGTCTGTTGTTAATTTTCCACAAAGAATATTTTACTCTAATCCAAAAACAAATGGTGAAAATACAGATAATTGGCATATTTATAAAGTGGCTAATTTTATCGACGGAAATGATAAATTAGGAAGGATTACGGATTTATTTACATACGATAATAAAACATATGTATTTTAGGAAAATGGCATTGGAACGTTATCTATAAATGAAAAACAAACAATGCAAAATACGTCTGGTGAAAATATTATTATTGGAACTTCCGACATTTTAAAAAATATAAACTACATTTCTTCTTCTTATGGAATGAGGTACATGGATATGTGTAAAATTGGAACGAGTGATGCAATATATTGGTTTGATTATTATAATAACTGTATATGCCAGATTAAAACAAAGATAAATTCATTTGACACACTTAATTGTATAAATTATAGTAGTTAGACAAATGTATCTAATATTATTAATAATTATTATGATGTACAAATAAAAGATGGTGCAGAAAAACGGCACATATTGCCCCCAAAAATCGTATTTGATAATATGAGAAGTGAATTGTATTTTGGAAATCTAAAAGTGAACGATTAGTATTACTCTATTATATTTAATACTAAATACTCTTTTGCTCAAACACTTATTTCTGAATACACCGACGCAGAAGTTGAAAAACATAAATTCTTAGGATTTTATAATATACTTGGCTACGTATGTAAGTTTGAACTAATTGATGATGGTAATTACACCAACAAAGGTATAATACAAAAATATTCTATTAATAGAGATAACTCCGATATACAATATCTAAAACCAATGTCAATACAATTTGTGATTAATAATGATACAAACAGTGTAAAAATATTTGATAACCAATAGATACAATATTCTAATAGATACGGTACAGATACACTTGAAAATAATCAGTTCTTCAAAGATAGAAAACTAAAAGTATTTACCGATATGTATAAAGGAGAATCGTATGTTTCTGATACAGATACATTTGTTACAGATAGAGAAGGTAGTGTATGTTATCCGATACCAAGAACTTGCGATGATAAAAACACATCTACAGATGTATATATGAATGAATATGGTAGGAGAATGCGAGGAAGATGGATGGTTGAAACATATACAGATCTTAATCCTTCAAAGAAATCTTCAATATATAATATAATAACTAAAACTAGAAAATCATATAATTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
43cda5a513d7141bfe0ee242968872ad55ee30f0c24776a01d5d057b45286742
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,3282
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Taxonomic proposal: Crassvirales, a new order of highly abundant and diverse bacterial viruses Shkoporov,A.N., Stockdale,S.R., Guerin,E., Ross,R.P. and Hill,C. 2023-03-24 — GenBank