Protein

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Genbank accession
XOT37905.1 [GenBank]
Protein name
baseplate protein
RBP type
TF
Evidence RBPdetect2
Probability 0,72
Protein sequence
MAIETNAVVITDLNPLYPRDRDYIYEGAAQIRLIKQTLQNTFPNVTEPVDIDSDTFKIMSEKLKFTGDAMDVGGLMIKNVTPGTGDKDVVTKGQMEAFMKNWMENKLYRIGSYYITEEDINPGDSISLGFGSWAKVTGVIMGTGVVNPDGSVPNAQRVEFQAGGTGGRVFNTIRTENVPLMTVNGSSFSLSSNTHSHNMVFGRGDASGHNSSPNWYSPGGGYSQRTDSDTHTHTISGSVSLGRDDISRQPINTLPPFRAAHIWRRIS
Physico‐chemical
properties
protein length:267 AA
molecular weight: 29201,29420 Da
isoelectric point:5,85938
aromaticity:0,08240
hydropathy:-0,42547

Domains

Domains [InterPro]
DC_0570
ATT
1–65
DC_0570 DC_0154
IPR053827
ATT
105–266
IPR053827
XOT37905.1
1 267
Architecture
ATT
STR
ATT
ATT 1-65 | STR 66-104 | ATT 105-266 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Taxonomy

  Name Taxonomy ID Lineage
Phage Escherichia phage EK5
[NCBI] 		3389963 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Escherichia coli
[NCBI] 		562 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
XOT37905.1 [NCBI]
Genbank nucleotide accession
PQ805429 [NCBI]
CDS location
range 32826 -> 33629
strand -
CDS
TTGGCTATCGAAACTAATGCGGTAGTTATTACCGACTTAAACCCACTCTATCCTAGAGACAGGGATTACATCTACGAAGGGGCGGCTCAAATCCGCCTCATTAAACAAACGTTACAGAACACATTCCCCAATGTTACAGAACCGGTTGATATAGATTCTGACACCTTTAAGATTATGTCAGAGAAGCTCAAGTTTACTGGTGATGCAATGGATGTTGGTGGTCTTATGATCAAGAACGTTACTCCGGGAACTGGTGACAAGGATGTTGTTACTAAAGGTCAGATGGAAGCGTTCATGAAGAACTGGATGGAGAATAAGCTCTATCGAATTGGTTCTTACTACATCACTGAAGAAGATATTAACCCCGGTGATTCTATCTCCTTAGGGTTTGGTTCTTGGGCTAAAGTGACTGGTGTCATTATGGGTACTGGTGTAGTAAACCCTGATGGTTCTGTCCCTAATGCTCAGAGAGTTGAGTTCCAAGCAGGTGGTACTGGTGGTCGTGTCTTCAATACCATTCGAACTGAGAACGTACCTCTGATGACAGTTAATGGCTCCAGCTTCTCTCTATCCAGTAACACTCACAGTCACAATATGGTGTTTGGTCGTGGAGATGCTAGTGGTCATAACAGCTCACCAAACTGGTATAGTCCGGGTGGTGGTTACAGTCAGAGAACTGATAGCGACACTCACACTCATACAATCTCTGGTAGTGTAAGTCTTGGTCGTGATGATATCTCTCGTCAACCTATTAACACTTTGCCACCATTCAGAGCAGCTCACATTTGGAGACGTATTAGCTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
d215484c0bb509754dc5e5d5da825133a7dd6d4481db869da26066d964187ef2
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7004
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Investigation of the effectiveness of bacteriophages isolated from environmental samples against clinical strains of Extraintestinal pathogenic Escherichia coli (ExPEC) producing extended-spectrum beta-lactamase (ESBL) Kulubecioglu,E., Karaynir,A., Bozok,T., Salih Dogan,H., Coral,G., Bozdogan,B. and Ocal,M.M. — — GenBank