Protein

View in Explore
Genbank accession
QNI21136.1 [GenBank]
Protein name
hypothetical protein
RBP type
TSP
Evidence RBPdetect
Probability 0,70
Protein sequence
MLEFTRLQRVQMSGFNSVDAEAFSLSHIANHLAVGFWLDRISQCGFSDRRNFSPIHALVAACLYRNSLHDVTVTTESADGCLVIINGVEEGETLFSIVVDTARNVVSVKLNEMAGRPVTTRYSLSVMNGKLCIVDGMRDDEGIAKFYYHRCSMTGKLLAVTESRLKDNGRRITTTEYVNAGMMAINKVDTDKGNVFGYATQMYASGEVDMAFRYYIPIFEECKDEYSIIRINGEFQLYHGDKDNKKPIASVLGSGDAMKLELGKNVLEFKTI
Physico‐chemical
properties
protein length:272 AA
molecular weight: 30383,38230 Da
isoelectric point:5,90349
aromaticity:0,09191
hydropathy:-0,11691

Domains

Domains [InterPro]

No domain annotations available.

Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
QNI21136.1
1 272
Domain Start End Length (AA) Confidence
N-terminal 1 10 10 0,0010
Central domain 11 209 200 0,0314
C-terminal 210 272 62 0,9698
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-10
Central
11-209
C-terminal
210-272

Taxonomy

  Name Taxonomy ID Lineage
Phage Vibrio phage vB_pir03
[NCBI] 		2762667 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Vibrio harveyi
[NCBI] 		669 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Vibrionales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
QNI21136.1 [NCBI]
Genbank nucleotide accession
MT811961 [NCBI]
CDS location
range 159769 -> 160587
strand +
CDS
ATGTTAGAATTTACACGCTTACAACGAGTACAAATGTCTGGTTTTAATTCAGTGGATGCAGAAGCATTCTCTTTAAGTCATATTGCAAATCACCTTGCAGTGGGCTTTTGGCTAGATCGTATTTCACAATGCGGCTTTAGTGACCGCCGTAACTTCTCTCCGATCCATGCGTTGGTAGCGGCATGTCTATACCGCAACTCGCTACATGACGTCACAGTCACCACAGAGTCCGCTGATGGTTGTCTTGTTATCATCAATGGGGTTGAAGAAGGAGAGACTCTTTTCAGCATTGTTGTCGATACTGCCCGCAATGTGGTATCAGTCAAGCTGAATGAGATGGCTGGGAGACCTGTGACCACTCGCTATAGTCTTTCCGTGATGAATGGTAAGCTATGCATTGTGGATGGAATGCGTGATGATGAGGGCATTGCAAAGTTCTATTATCATCGTTGCTCTATGACTGGCAAACTACTTGCAGTTACAGAAAGTCGCTTGAAGGACAATGGACGTCGAATCACTACTACAGAGTACGTCAATGCGGGCATGATGGCTATCAATAAAGTAGACACTGACAAAGGCAATGTCTTTGGCTATGCTACACAGATGTACGCTAGTGGAGAAGTCGACATGGCGTTCCGTTACTACATCCCAATTTTCGAAGAGTGCAAAGATGAGTACTCGATCATACGAATTAATGGGGAGTTCCAACTGTACCATGGAGACAAAGACAACAAGAAACCAATCGCGAGTGTTCTTGGGTCTGGCGATGCCATGAAGTTGGAGCTAGGTAAAAACGTACTCGAATTCAAAACTATTTAG

Genome Context

Genome Context

Tertiary structure

PDB ID
d4aff72d276d2afa97eb3af885ee7ff14e99d6c603f7859290a907b6f14838c7
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,4373
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Biological and genomic characterization of a novel jumbo bacteriophage, vB_pir03 with broad host lytic activity against Vibrio harveyi N Misol,G. Jr., Katharios,P. and Kokkari,K. 2020-12-15 — GenBank