Protein

View in Explore
Genbank accession
YP_009210006.1 [GenBank]
Protein name
hinge connector of long tail fiber protein distal connector
RBP type
TF
Evidence UniProt/TrEMBL
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,90
Protein sequence
MADLRVGSTTGGSVIWHQGNFPLTPVSNDVFYKTYKVYTEFNKPQAADNDFVSKAAGGTYLNTVGFDKDLQFKDTDGYWVKLGRKVNNSPMSATYSFSFRMSKGMGLETSDGTPFVIFDPSTVVGANRLTVMGDILGRQIKDESGRVFSPGNTPSKAQVGLSDVDNAKQVQINNSNIQSMAGVLSAPNFISRNPGTLNEHVPRIDQVVLRGTYEDFGYY
Physico‐chemical
properties
protein length:219 AA
molecular weight: 23965,50640 Da
isoelectric point:6,73107
aromaticity:0,10959
hydropathy:-0,38174

Domains

Domains [InterPro]

No domain annotations available.

Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_009210006.1
1 219
Domain Start End Length (AA) Confidence
N-terminal 1 29 29 0,9596
Central domain 30 208 180 0,1210
C-terminal 209 219 10 0,9048
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-29
Central
30-208
C-terminal
209-219

Taxonomy

  Name Taxonomy ID Lineage
Phage Escherichia phage vB_EcoM_VR25
[NCBI] 		1567028 Uroviricota > Caudoviricetes > Pantevenvirales > Tevenvirinae > Gaprivervirus
Host Escherichia coli
[NCBI] 		562 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_009210006.1 [NCBI]
Genbank nucleotide accession
NC_028925 [NCBI]
CDS location
range 156217 -> 156876
strand +
CDS
ATGGCCGATTTAAGAGTAGGCTCAACGACTGGCGGGTCAGTAATATGGCACCAGGGTAATTTTCCGTTGACGCCGGTTAGCAACGATGTTTTTTACAAAACATACAAAGTATACACAGAATTTAATAAACCACAAGCAGCAGATAACGACTTTGTTTCTAAAGCAGCAGGTGGGACATATCTGAACACTGTAGGGTTTGATAAAGATTTACAGTTTAAAGACACCGATGGGTATTGGGTTAAATTAGGACGTAAAGTAAACAACTCCCCAATGTCTGCTACATATTCTTTCTCATTTAGAATGAGCAAAGGTATGGGTCTTGAGACATCGGATGGTACACCGTTTGTAATTTTTGACCCGAGCACTGTTGTAGGTGCAAACAGACTTACTGTTATGGGTGATATCCTTGGTCGTCAAATTAAAGATGAATCAGGGAGAGTATTTTCTCCAGGGAATACTCCGTCAAAAGCACAAGTTGGATTAAGTGATGTGGATAACGCAAAACAGGTCCAAATAAATAATAGTAACATACAATCTATGGCTGGTGTTCTTTCAGCCCCGAATTTTATATCTAGGAACCCAGGTACATTGAACGAACACGTTCCTCGTATTGACCAGGTTGTTCTTAGAGGCACATACGAAGATTTTGGATATTATTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
f164598aa9e00c243602246ce4112127117ad91edbb206c64586cce3a6d84002
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,5606
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
VR bacteriophages - a small but diverse group of low-temperature viruses Kaliniene,L., Meskys,R., Simoliunas,E., Zajanckauskaite,A. and Truncaite,L. 2015-03-10 — GenBank