Protein

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Genbank accession
QDF14322.1 [GenBank]
Protein name
minor structural protein
RBP type
TF
Evidence RBPdetect2
Probability 0,78
Protein sequence
MIHVLDFEGKIIDYIDKDDLNVFKVLHKKTVESETLDIEIDSDRAEHFKKRHRVIIKDKTDKYREFIIDRATEESGLVVVEATASHLVDLKNARPLKKGKYEKMGVNEKVSEILRDSRWSVKDSVFAGITTTTWDKTIYAHELLTQIANEHKVKYEFEVVVDGYEVTDRFVNIEEPTPLFKGREIVYGKDLVSMKRSIDFTEVRTALYIVGPEEEKKPAKDTMVFDDDAQEQFGDSYHYIWDVYEPSEGVTADTSVEELQRLGKIELAKRNSSALSYELNIVDLEQEFPHEIINFGDIVRIKNPDFVPSLYAESEVLGIEHELISGDCNYTFGNIVERSEDELLRYFRNKLYYINQKLNDGLTNVNTIVADVVEGQLEYFERKIFKGEEPPESPVNDMLWLDTRNPDVAVLRRYWNGQWINATAEKAKDIGAITREQALYSELNNTFTNLSIQHAKLLKEMYQIINSEYFVDEDLKQQLNMALDETIQVYNNIKNNIDSMTDETATIGKLIDTQAMFLYYREKMQGLYNVVEQAKISIDNRFKLLQSQYTEEKYNDAMRTVATVLGGEWNPETRQLTATIPNEERLNQIRTEITNAYNQQISSVEDKLRKETDSKLVNTKEEISATIKQVEESVSGLESSISNSEENALKASKEYADAQDKLKVIEANAYADGLIEEAEQRAIQEAQAKLEEAKRYTEEQASLKADEAVKPIVSRIIESEASIKAVQDKLLLTATKTDIQETLNAQLSPIKRDVEEQKASIQVMSNSIDSKVSNSKYETDQNNIVQRLNQSESQTQQLSNKISQTVSKSDFQSGLDAIQIGGVNLFQSYNPELHGSNVASFISNTKAFRGKFWATNLYNAEYLKTVLIPGKEYVYSYEIEIVGVSDYPIQYSGKHGIIFYSASNSNDSKLSYKDIERLEGNKFRITQTFTAPEITDHRFVAYSGLYTPDGRLGTQHDSNIAEIRNLKLEEGNKSTGWTPALEDVEKTTNEKLTQSKAEILIEAEQVTNRVSREVFNASSKTLERYTSEFINNVSDGMSFRYDDNGNIQSHSIGPQGVRLRGDKVDITVNKEFNVLAQSVSNKADETNIINKINLSTEGLDINVNKVGIHGGDSSKYIDIQNDEITLYGTYDRAWRQGREHFETYTILKNGMMRFRNQNFNRSIYLSDFGISTYIDGNPIEASGTLAFFDYTYDSNARGVTLHSGPGVVGIRSESNRVVVEADNTVNIGSNQNSIYIRPNVNSRPGQNEFSFYIKKNDTAGDTDGTLLFGEISNTNGLAGSGLRFKKAGVSGRTDYESIIYATDNKGNIGTGSFHGINFYGSLKSTGTNVYVMADTYGELRVTNFAGYNNGSPNYESIRVKSLKTMNSYAFENHSGSDVYMGVGANEFRITDNNHYNGGKTKYKNVRANIFYGTISPNSSEKFKTNIEEWNVDASQMIRDTKIYEYNYKYHLEENINERKHGVILERETPEHIKGKDSIDLYELVSTNTKALQEQILRNDLLEEKIKKLEEKING
Physico‐chemical
properties
protein length:1514 AA
molecular weight: 172046,37650 Da
isoelectric point:5,05847
aromaticity:0,09049
hydropathy:-0,62378

Domains

Domains [InterPro]
DC_0109
STR
1–649
DC_0109 DC_2057 DC_0203
IPR007119
Unmapped
32–332
IPR007119 Coil Coil Coil Coil Coil
QDF14322.1
1 1514
Architecture
STR
STR
RBD
STR 1-649 | STR 654-1018 | RBD 1385-1514
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Taxonomy

  Name Taxonomy ID Lineage
Phage Staphylococcus phage PMBT8
[NCBI] 		2590894 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Staphylococcus hyicus
[NCBI] 		1284 cellular organisms > Bacteria > Bacillati > Bacillota > Bacilli > Bacillales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
QDF14322.1 [NCBI]
Genbank nucleotide accession
MK893987 [NCBI]
CDS location
range 24087 -> 28631
strand +
CDS
TTGATTCATGTTTTAGATTTTGAGGGAAAAATAATTGACTATATTGATAAAGATGACTTAAATGTTTTTAAAGTCCTTCATAAAAAAACTGTTGAGTCTGAAACATTAGATATTGAAATCGACAGTGATAGAGCTGAACATTTCAAAAAAAGACATAGAGTAATCATAAAAGATAAAACAGATAAATATAGAGAATTTATTATTGACCGCGCCACAGAGGAAAGTGGATTAGTTGTTGTTGAGGCTACTGCGTCTCATTTAGTAGACCTAAAAAATGCACGTCCTTTAAAAAAAGGTAAATATGAGAAAATGGGCGTCAACGAAAAGGTTTCTGAGATATTAAGAGATAGTAGGTGGTCTGTGAAAGACTCTGTATTCGCTGGAATTACAACAACAACATGGGATAAAACAATATACGCCCATGAATTATTAACTCAAATAGCAAACGAACACAAGGTAAAGTACGAGTTTGAAGTTGTTGTAGATGGGTATGAAGTAACTGATAGATTTGTTAATATCGAAGAACCTACACCATTATTCAAAGGAAGAGAGATTGTTTATGGAAAAGATTTAGTCTCTATGAAACGCTCTATTGATTTTACAGAGGTTAGAACAGCTCTTTATATCGTAGGTCCAGAAGAAGAAAAGAAACCCGCTAAAGATACTATGGTCTTTGATGATGACGCCCAAGAGCAATTCGGAGATTCCTATCATTATATATGGGATGTGTATGAGCCTTCAGAAGGAGTTACGGCAGACACTAGTGTTGAAGAGTTGCAAAGACTCGGAAAAATAGAATTAGCTAAAAGAAATTCATCCGCTCTTTCATATGAACTAAACATTGTAGATTTAGAACAAGAATTTCCTCATGAAATTATAAATTTTGGAGATATAGTCAGAATTAAAAATCCAGATTTTGTTCCTAGCTTGTATGCAGAGTCAGAAGTTTTAGGCATAGAACATGAACTTATAAGCGGGGATTGTAATTATACATTTGGGAATATTGTTGAGCGTAGTGAAGATGAATTATTAAGATATTTTAGAAATAAGTTATATTATATCAACCAAAAACTCAATGATGGATTGACTAATGTCAATACTATAGTTGCAGATGTGGTCGAAGGGCAACTAGAATATTTTGAGCGCAAAATATTTAAAGGGGAGGAGCCTCCTGAATCTCCAGTAAATGACATGCTTTGGTTAGATACGAGAAACCCAGATGTAGCTGTTTTACGTCGATATTGGAATGGTCAATGGATTAATGCTACCGCTGAAAAGGCTAAGGATATTGGGGCAATCACTAGAGAACAAGCTTTATATAGTGAGTTGAATAATACTTTCACAAACCTATCTATCCAGCATGCAAAATTACTGAAAGAAATGTATCAGATTATCAACTCTGAATATTTTGTAGATGAAGATTTAAAACAACAGTTAAACATGGCTTTAGATGAAACTATCCAAGTTTACAACAACATCAAAAATAATATTGATTCTATGACTGATGAAACTGCCACTATAGGTAAGTTAATAGATACCCAGGCTATGTTTTTGTATTATAGAGAAAAAATGCAGGGCTTGTACAATGTTGTTGAACAAGCAAAAATTTCTATTGATAATAGATTTAAATTGCTTCAGTCACAGTATACGGAAGAAAAATATAACGATGCTATGAGAACTGTTGCGACGGTTCTTGGTGGTGAATGGAACCCCGAGACTAGACAACTAACAGCAACAATACCAAACGAAGAACGTCTCAACCAAATAAGAACTGAAATTACAAACGCCTACAACCAACAAATATCATCTGTAGAAGATAAACTAAGAAAAGAAACAGACAGTAAGCTAGTTAACACAAAAGAAGAAATTAGTGCGACTATTAAACAAGTTGAAGAATCCGTTTCAGGATTGGAATCAAGTATATCAAACTCAGAAGAAAATGCTCTTAAAGCATCAAAAGAATATGCTGACGCTCAAGACAAATTAAAAGTAATTGAAGCCAATGCTTATGCAGATGGTTTAATTGAGGAGGCGGAGCAAAGAGCAATACAAGAGGCTCAGGCTAAGCTTGAAGAAGCTAAAAGATATACCGAAGAACAGGCGTCCTTAAAAGCTGATGAGGCTGTTAAACCTATAGTTAGCAGGATAATAGAATCCGAAGCATCTATAAAAGCTGTACAAGATAAACTGTTATTAACGGCAACAAAAACCGATATACAAGAAACATTAAATGCTCAACTTTCCCCTATTAAAAGAGACGTTGAGGAGCAAAAAGCCTCTATTCAAGTAATGTCTAATAGCATAGATTCGAAAGTGTCTAATTCTAAATACGAAACAGACCAAAACAATATTGTTCAACGCTTAAATCAAAGTGAATCACAAACACAACAACTATCTAATAAAATTTCTCAGACGGTTAGTAAATCTGATTTTCAAAGCGGACTTGATGCCATTCAAATTGGTGGTGTCAACTTATTCCAATCATATAATCCAGAATTACACGGAAGCAATGTAGCATCCTTCATTAGCAACACTAAAGCGTTTAGAGGTAAGTTTTGGGCTACAAATCTGTACAATGCTGAATATCTTAAGACAGTATTGATACCAGGAAAAGAATATGTTTATTCATATGAGATTGAAATTGTTGGAGTATCTGATTATCCAATACAATATTCTGGTAAACATGGCATAATTTTTTATAGCGCATCTAACTCCAACGATTCCAAGTTGAGCTATAAAGATATAGAAAGACTTGAGGGCAATAAATTTAGGATTACACAAACATTTACAGCTCCAGAAATTACCGACCATAGATTTGTAGCATATTCTGGGTTGTATACTCCAGATGGCAGATTGGGAACGCAACACGATTCTAATATAGCCGAAATAAGGAATCTAAAACTAGAAGAAGGTAATAAGTCTACTGGATGGACACCAGCTCTAGAAGATGTTGAAAAAACAACAAATGAAAAACTTACTCAATCAAAAGCGGAAATTTTAATAGAAGCAGAACAAGTAACTAATAGAGTATCTAGAGAAGTATTTAATGCTAGTAGTAAAACTTTAGAAAGATATACTTCTGAATTTATCAATAATGTCTCAGATGGAATGTCATTTAGATATGATGATAATGGTAACATTCAATCACATTCAATAGGTCCTCAAGGGGTTAGATTGCGTGGAGATAAAGTTGATATTACAGTTAACAAAGAATTTAATGTATTAGCTCAAAGTGTTTCTAATAAAGCAGACGAAACCAACATTATCAATAAGATTAACCTTTCTACAGAAGGACTTGACATAAATGTTAATAAAGTTGGTATTCATGGCGGAGACAGTAGTAAATACATTGATATTCAAAATGATGAGATAACCTTATATGGAACCTATGATAGAGCATGGAGACAAGGCAGAGAACATTTTGAAACATATACCATTTTAAAAAATGGTATGATGCGATTCAGGAATCAAAATTTTAACCGCTCTATTTATTTATCAGATTTTGGTATCTCCACTTATATAGATGGAAACCCAATAGAAGCTTCTGGTACTTTGGCATTTTTTGATTACACTTATGATTCTAATGCACGTGGTGTTACTCTACACTCAGGACCAGGGGTTGTGGGTATTCGCTCAGAAAGTAATAGGGTTGTAGTTGAAGCAGACAACACCGTCAACATAGGAAGTAATCAAAATAGCATATATATTAGACCAAATGTTAATAGTAGACCAGGTCAAAATGAGTTTAGTTTTTATATTAAAAAAAATGATACAGCTGGAGACACTGACGGAACGCTTCTATTTGGTGAAATATCTAATACTAATGGATTGGCAGGTTCTGGCTTAAGATTTAAAAAAGCTGGGGTGTCTGGAAGAACTGATTACGAAAGCATTATATATGCCACTGATAATAAAGGAAACATTGGCACAGGAAGTTTCCATGGAATTAATTTTTATGGTAGCTTAAAATCAACAGGAACTAATGTATATGTTATGGCAGATACTTATGGCGAATTGCGAGTAACAAATTTTGCAGGATATAATAATGGAAGCCCTAACTACGAAAGTATTCGTGTAAAATCTCTAAAAACTATGAATAGTTACGCTTTTGAAAATCATAGTGGCTCAGATGTATATATGGGTGTTGGCGCTAACGAATTTAGGATTACAGACAATAACCATTATAATGGCGGAAAGACCAAGTATAAAAATGTCAGAGCAAATATATTTTATGGGACAATATCTCCAAACTCTTCTGAAAAATTTAAAACTAATATAGAAGAATGGAATGTTGATGCTTCTCAGATGATTAGAGACACTAAAATATATGAATATAATTACAAATATCACTTAGAAGAGAATATCAATGAACGTAAACATGGTGTAATTCTTGAAAGAGAAACGCCAGAACATATTAAGGGCAAGGATAGTATTGATTTATATGAATTAGTATCTACTAACACAAAAGCGTTGCAAGAACAAATTCTTAGAAATGATTTACTAGAAGAGAAGATTAAAAAACTGGAGGAGAAAATAAATGGATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
df9c0d5261abfa79a2a8ccb6851c7da3620288c5851c012228450dea1f440ff4
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,7121
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
First Molecular Characterization of Siphoviridae-Like Bacteriophages Infecting Staphylococcus hyicus in a Case of Exudative Epidermitis Tetens,J., Sprotte,S., Thimm,G., Wagner,N., Brinks,E., Neve,H., Holzel,C.S. and Franz,C.M.A.P. 2021 34305825 GenBank