Protein

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Genbank accession
AVR55810.1 [GenBank]
Protein name
tail spike protein
RBP type
TF
Evidence Phold
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
Protein sequence
MFYGCKAPNIKIMINAVGTRAKGWYFKESSVTMVPSTSNAYKYGIKNCYKNAVLSLSSKIMLSKYSFTNNGNNLDGTQEQSLLYCNDQGELTGFDLKLDNNGSENCNGWLYYCGYGSKMTLTNSSITNNKSATNILNNNNSYMNLQYPNFTGSKAASLLLCYNGAHTNITRRNVTNCTWSKYELPFATNTVTANGIIYA
Physico‐chemical
properties
protein length:199 AA
molecular weight: 22079,63030 Da
isoelectric point:9,08683
aromaticity:0,12060
hydropathy:-0,41256

Domains

Domains [InterPro]

No domain annotations available.

Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
AVR55810.1
1 199
Domain Start End Length (AA) Confidence
N-terminal 1 10 10 0,0039
Central domain 11 188 179 0,9967
C-terminal 189 199 10 0,1610
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-10
Central
11-188
C-terminal
189-199

Taxonomy

  Name Taxonomy ID Lineage
Phage Campylobacter phage CP39
[NCBI] 		2136799 No lineage information
Host Campylobacter jejuni
[NCBI] 		197 cellular organisms > Bacteria > Pseudomonadati > Campylobacterota > Epsilonproteobacteria > Campylobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
AVR55810.1 [NCBI]
Genbank nucleotide accession
MH107028.1 [NCBI]
CDS location
range 121978 -> 122577
strand -
CDS
ATGTTTTATGGTTGCAAAGCACCTAATATTAAAATTATGATTAATGCTGTAGGAACTAGAGCAAAAGGATGGTATTTTAAAGAAAGTTCTGTTACTATGGTTCCTTCAACATCTAATGCATACAAATATGGTATTAAAAATTGTTATAAAAATGCAGTTTTATCATTATCTTCTAAAATTATGCTATCTAAATATAGCTTTACCAACAATGGTAACAATTTAGATGGAACACAAGAGCAATCATTATTATATTGTAATGATCAAGGTGAATTAACGGGATTTGATTTAAAATTAGATAATAATGGTAGTGAAAACTGTAATGGATGGTTATATTATTGTGGATATGGTTCTAAAATGACATTAACTAATTCATCAATTACAAATAATAAATCTGCTACTAATATATTAAATAATAATAATTCTTATATGAATCTACAATATCCTAATTTTACAGGTTCAAAAGCAGCAAGTTTATTATTATGTTATAATGGTGCTCATACAAATATAACAAGAAGAAATGTAACCAATTGCACATGGAGTAAATATGAATTACCATTTGCTACCAATACTGTTACAGCCAATGGAATAATTTATGCTTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
160b00b9397a49b6897c6f795c65f8a110755d24628f3b86bbd8721022b575a2
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7887
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Isolation, identification, CP39 whole genome analysis and application of Campylobacter jejuni 11168 phage Song,Z., Huang,J., Tong,Y. and Zhao,F. 2022-02-26 — GenBank