Protein

View in Explore
Genbank accession
ATB52653.1 [GenBank]
Protein name
putative tail fiber protein
RBP type
TF
Evidence RBPdetect
Probability 0,87
Protein sequence
MGLENTHPDIRPDEFNVNWPEGTDDQKYGDDHIRLVKLGTYNFWQDFEKFKVDQGDLFTGSKAKEAIQADNAAKLNNEDPDKFARIDGNYSKLRAQATTKDDVGLSRVPNYYISNSSNSGSTTNFASSYAVKGAYDLAKAANDKANSPDGYNGIGSYCMAMFEADRVYPPQGGANTIVAGSRLYPAGFRRDSNGRVDIVYESSTKLSGSWCVMGMAYNYFPSQGSTQRTVSLFVRVS
Physico‐chemical
properties
protein length:237 AA
molecular weight: 26142,43540 Da
isoelectric point:5,46418
aromaticity:0,11814
hydropathy:-0,67131

Domains

Domains [InterPro]
DC_0570
ATT
1–70
DC_0570 DC_1233
ATB52653.1
1 237
Architecture
ATT
RBD
ATT 1-70 | RBD 136-237
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Taxonomy

  Name Taxonomy ID Lineage
Phage Vibrio phage vB_VspS_VS-ABTNL-3
[NCBI] 		2026084 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Vibrio splendidus
[NCBI] 		29497 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Vibrionales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
ATB52653.1 [NCBI]
Genbank nucleotide accession
MF497422 [NCBI]
CDS location
range 12474 -> 13187
strand +
CDS
ATGGGATTAGAAAATACACATCCGGATATCAGACCTGATGAGTTTAACGTAAACTGGCCTGAGGGAACGGACGACCAGAAGTACGGGGACGACCATATTCGACTCGTAAAACTGGGTACGTATAACTTCTGGCAGGACTTTGAAAAGTTTAAAGTTGATCAGGGGGATTTATTTACAGGCAGTAAAGCCAAGGAAGCTATTCAAGCTGATAATGCTGCCAAACTTAATAATGAAGATCCTGATAAGTTTGCACGTATCGACGGGAACTATTCCAAATTACGAGCGCAGGCAACTACGAAAGACGACGTAGGTCTAAGCCGCGTACCTAACTACTATATTAGTAACTCGTCAAATAGCGGTAGTACAACTAACTTTGCTTCTAGCTACGCTGTTAAAGGTGCTTATGACTTAGCGAAGGCTGCTAATGATAAGGCAAATTCTCCTGATGGTTATAATGGGATTGGTAGTTACTGTATGGCTATGTTCGAAGCAGATCGAGTATATCCACCTCAAGGAGGTGCTAATACTATTGTAGCAGGGTCTCGTTTATATCCGGCGGGTTTTCGAAGAGATTCTAACGGGCGAGTTGATATAGTTTACGAATCGTCTACTAAACTATCAGGTTCTTGGTGTGTTATGGGTATGGCTTATAATTATTTTCCATCCCAAGGATCGACTCAACGTACGGTGTCTCTTTTTGTGAGGGTTTCATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
d1e5b5ea9660c0e4166f65e8c4acf9fc9fee905c35b8b5977f4acf585998b3ac
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7200
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Genome squencing of lytic phage specific to Vibrio splendidus responsible for the infection in the juvenile sea cucumber, Apostichopus japonicus Li,Z., Zhang,J., Ren,H. and Xu,Y. 2023-12 — GenBank