Protein

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Genbank accession
AXG66445.1 [GenBank]
Protein name
hypothetical protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
Protein sequence
MKSLKLLCLLFVSCFSFGSTIVTSVGNSTFVSDSNGTTVYNKVGNQIYGSDGTSVNRYGNTTILNDGQGNSTIYNKVGSSTLGSDGTLIQNVGGSTFITDGNGKTTVCSHVGNSTFCN
Physico‐chemical
properties
protein length:118 AA
molecular weight: 12217,35940 Da
isoelectric point:7,64316
aromaticity:0,08475
hydropathy:-0,04407

Domains

Domains [InterPro]

No domain annotations available.

Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
AXG66445.1
1 118
Domain Start End Length (AA) Confidence
N-terminal 1 86 86 0,2503
Central domain 87 107 22 0,8967
C-terminal 108 118 10 0,1608
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-86
Central
87-107
C-terminal
108-118

Taxonomy

  Name Taxonomy ID Lineage
Phage Dickeya phage vB_DsoM_JA13
[NCBI] 		2283030 Uroviricota > Caudoviricetes > Salmondvirus >
Host Dickeya solani MK10
[NCBI] 		1224151 Pseudomonadota > Gammaproteobacteria > Enterobacterales > Pectobacteriaceae > Dickeya > Dickeya solani

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
AXG66445.1 [NCBI]
Genbank nucleotide accession
MH460460 [NCBI]
CDS location
range 26488 -> 26844
strand +
CDS
ATGAAATCTTTAAAACTACTCTGCCTTTTGTTTGTTTCCTGTTTCAGCTTCGGAAGCACTATCGTAACTTCTGTTGGAAACAGTACATTTGTTTCGGATAGTAACGGAACAACGGTATACAACAAGGTGGGAAATCAGATTTACGGAAGCGATGGAACATCTGTAAATAGGTATGGTAACACCACTATTCTGAATGACGGGCAAGGCAATTCCACCATCTATAATAAAGTTGGTAGCAGCACGTTAGGCAGCGACGGCACGCTGATTCAGAATGTAGGCGGCAGCACTTTTATTACTGACGGCAACGGTAAAACAACTGTTTGCTCTCATGTAGGAAACTCAACCTTCTGCAATTAG

Genome Context

Genome Context

Tertiary structure

PDB ID
9f45e0a8a980f83d535e7a32ab40f79bbf967c707cd3196ab4b73bac65710500
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7584
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Jumbo Bacteriophages Are Represented Within an Increasing Diversity of Environmental Viruses Infecting the Emerging Phytopathogen, Dickeya solani Day,A.W., Ahn,J. and Salmond,G.P.C. 2018 — GenBank