Protein

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Genbank accession
YP_010054086.1 [GenBank]
Protein name
tail spike protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
TF
Evidence GenBank
Probability 1,00
TF
Evidence Phold
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,91
TSP
Evidence RBPdetect2
Probability 0,95
TSP
Evidence UniProt/TrEMBL
Probability 1,00
Protein sequence
MATTPTSLPIPSEDPRDLKFNAGKFDEVMTSDAHYYVDRFGVKRWTIAGFQYTAEEAIRAYGYITMDSFEDGATLTLPNQVLRYEATGEYYRWDGAFPKAVAAGSTPASTGGVGLGAWISVGDAAFRQEANKKFKYSVKLSDYSTLQEAATAAVDGVLIDRDYTFTDNETVDFGGKVLTIDCKAKFIGDGNLTFTNLGAGSLVNSPYMESATTPWVIKPWTDDNQWITDPAAVVATLKQSKTDGYQPTVNDYAKFPGIESLLPPEAKDQNISSVLEIRECTGVEVHRASGLMACFLFRRCHFCKMIDADNPIGGKDGVITFENLSGDWGKGNYVIGGRTSYGSVSSAQFLRNNGGFARDGGVIGFTSYRAGESGVKTWQGSVGSSTARNYNLQFRDSVVLYPVWDGFDLGADTDMNPEDDRPGDFPFSQYPVHMLPLNHLIDNLLVRGSLGVGFGMDGKGLYVSNITVEDCAGSGAYILAHETVFTNIAIIDTNTKNFPANQIYISGACLVNGLRLVGIRSTNEQGLTIDAPNSTVSGITGLVDPSRINVANLADEGLGNTRINSFNNDSAALQLRIHKLTKTLDSGAVYSHINGGPGSGSAWTEITAISGSLPDAVSLKINRGDYRAVEIPVAMSPLPENAVRDIGSISMYLEGDSLKALVRRADGSYTRLTLA
Physico‐chemical
properties
protein length:675 AA
molecular weight: 72712,46550 Da
isoelectric point:4,92666
aromaticity:0,09630
hydropathy:-0,19200

Domains

Domains [InterPro]
DC_1559
ATT
1–175
DC_1559
G3DSA:2.10.10.80
ATT
62–126
G3DSA:2.10.10.80 IPR011050
IPR040775
RBD
64–123
IPR040775 IPR011050
IPR012332
STR
127–675
IPR012332
IPR015331
RBD
129–675
IPR015331
YP_010054086.1
1 675
Architecture
ATT
STR
ATT 1-175 | STR 176-675
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_010054086.1
1 675
Domain Start End Length (AA) Confidence
N-terminal 1 145 145 0,9878
Central domain 146 586 442 0,9876
C-terminal 587 675 88 0,8193
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-145
Central
146-586
C-terminal
587-675

Taxonomy

  Name Taxonomy ID Lineage
Phage Salmonella phage vB_Se_STGO-35-1
[NCBI] 		2749381 Uroviricota > Caudoviricetes > Caminolopintovirus >
Host Salmonella enteritidis
[NCBI] 		149539 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_010054086.1 [NCBI]
Genbank nucleotide accession
NC_054648.1 [NCBI]
CDS location
range 33389 -> 35416
strand +
CDS
ATGGCTACCACACCGACTAGCTTACCAATCCCGTCAGAAGACCCGCGCGACCTGAAGTTTAACGCTGGTAAATTTGATGAAGTCATGACATCTGATGCACATTACTATGTGGACAGATTTGGCGTAAAACGCTGGACTATTGCTGGATTCCAGTACACTGCGGAAGAGGCCATTCGTGCTTATGGATATATCACAATGGATAGCTTTGAAGATGGCGCGACGTTGACGCTACCAAATCAGGTGCTACGTTACGAGGCAACCGGAGAATATTACCGATGGGATGGTGCATTTCCTAAGGCTGTAGCTGCTGGTTCAACTCCTGCATCAACTGGTGGCGTTGGTTTAGGCGCGTGGATTAGTGTTGGTGACGCAGCATTTAGACAGGAAGCCAACAAAAAATTCAAATATTCAGTAAAATTATCAGATTATTCTACCTTGCAGGAAGCAGCAACAGCAGCAGTTGACGGAGTGTTGATTGACCGCGACTATACATTCACCGACAACGAGACAGTTGATTTTGGCGGCAAAGTACTAACCATCGACTGTAAAGCTAAATTTATCGGAGATGGTAATCTTACATTTACTAATCTTGGCGCGGGTTCTTTAGTAAACTCTCCGTATATGGAAAGTGCCACAACTCCGTGGGTAATTAAACCGTGGACTGATGATAATCAGTGGATAACAGACCCTGCGGCAGTCGTGGCTACACTTAAACAGTCTAAAACAGATGGATACCAGCCTACGGTAAACGATTACGCCAAGTTCCCGGGCATAGAATCCCTTCTCCCTCCGGAAGCTAAAGACCAGAACATTTCGTCTGTTCTTGAGATACGGGAATGTACAGGCGTCGAGGTTCACCGGGCGAGTGGTCTTATGGCGTGTTTCCTGTTCCGTAGATGCCATTTCTGTAAGATGATTGACGCCGATAATCCCATCGGCGGGAAGGACGGTGTAATTACCTTCGAAAACTTAAGCGGAGATTGGGGCAAAGGTAACTATGTTATTGGTGGGCGAACAAGTTATGGCTCAGTAAGTAGCGCCCAATTTCTACGTAACAATGGTGGTTTCGCGCGCGATGGCGGGGTCATCGGGTTTACCTCGTATCGTGCGGGGGAAAGTGGTGTTAAGACGTGGCAGGGTTCGGTAGGTTCTTCGACCGCTCGTAACTATAACCTGCAATTCCGCGACTCCGTGGTCCTATACCCCGTATGGGACGGCTTCGATTTAGGTGCGGATACCGACATGAACCCAGAAGATGACCGCCCAGGGGATTTCCCATTTTCTCAGTATCCGGTACACATGCTCCCCCTAAACCATTTGATTGACAATCTACTGGTTAGAGGTTCGTTGGGGGTAGGTTTTGGTATGGACGGGAAAGGTCTGTATGTCTCTAACATAACCGTCGAGGATTGCGCTGGTTCTGGGGCTTATATTCTGGCCCATGAAACAGTATTCACTAATATCGCTATAATCGACACCAATACAAAAAATTTCCCTGCGAACCAGATATACATCTCAGGGGCCTGCCTTGTAAATGGTCTTCGTTTGGTCGGCATCCGGTCGACTAACGAACAGGGGCTTACGATAGACGCGCCTAACTCCACGGTAAGTGGTATAACCGGATTAGTGGACCCTTCTAGGATTAACGTAGCCAATCTAGCGGACGAAGGTCTGGGAAACACACGTATAAATAGTTTCAATAACGATTCTGCGGCGCTACAGTTGCGTATTCATAAACTAACAAAGACCCTTGATAGTGGGGCAGTGTACTCCCACATTAACGGTGGGCCTGGTTCTGGTTCAGCATGGACAGAAATTACCGCTATTTCGGGGTCATTGCCGGATGCCGTGTCATTAAAAATAAACAGGGGCGATTATCGCGCGGTTGAAATACCGGTAGCGATGTCTCCCCTACCGGAAAACGCTGTCAGGGATATCGGGTCTATCTCAATGTATTTAGAGGGTGATAGCCTGAAGGCGTTAGTTAGGCGGGCGGACGGAAGCTATACAAGATTAACTTTGGCATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
46c463c2ed7afcb2adeeb33b448f9e970d52de4c8cdd28b3cd8c4c1ce854357e
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,6998
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Genetic and phenotypic characterization of New Siphoviridae, Salmonella Phage STGO-35-1, showed the presence of Tailspike with possible modular conformation and plasticity Hudson,L.K., Moreno-Switt,A.I., Denes,T.G., Peters,T.L., Aziz,R.K., Samir,R., Noben,J.-P., Lavigne,R., Wagemans,J., Duenas,F., Camejo,P. and Rivera,D. 2022-03-12 — GenBank