Protein

View in Explore
Genbank accession
UYL04388.1 [GenBank]
Protein name
tail spike protein
RBP type
TF
Evidence Phold
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,91
TSP
Evidence RBPdetect2
Probability 0,94
Protein sequence
MADNFPQYPATSFDQAVDLTIYASNQLGDVINGDATSVVSTESGDIPTLRKALIDNFYFKNPIQWNPGNTNTVFNQLYVFDTDNINKGWYYAPTATATNPILMGSTPVGDANWKLYSLVATGIPAQVFPWSTEITQVTSSIVPPYEFDTAIVTYNSGVLVPGKDYTIANNTITFTPPLSPEPDAEVPDILFCYIGKVEEGNPNINYVTYNSLAAPTAADIIGTSSGETVQTVLNNKININELNYVTPEMSGFVTGVGNADDDTAAIQWALNQGAALVVFDSTKTYNIQPGVIQHTGKINVDAGTAKIVCDGIAVDIIDGAGSVWKGGNLLSKTTPWTVVYDEDFNIVESGNLGYGRMPYQDDANVDSSHYYQQICCSLVFRSSTSDVLDGLTVSGVNGSYAAVVAAGFKNTKWTHNKIRGGALAGAIMVLNDCELPVTAGFGWNAGVDVSYGNPFKWARGSNHTFENCDLFESRQMGLCVTGSDCVTISNVNTYDNAESGVQTGQYSSAYPQESIICKHVIQIGCKSWGNYYDGLDHASVTSGAAGPYFDKYLNVSNCESFNNRATGIFAQGNNLQIKGNNFHDNGAHGIRVQDSAVVDLSRNQCTYNGRLAGGYQIAAVGSDMSVDDNTVLNTSQTDSHLVNISIGLQTQKQFGVKFKNTPLSTRSSPKTVIGIGVLMSSDEKTSDGSDASYSGVRASGYIPAPIAGVTSTKSVASEAGAVAAWKHPTTGAWMRLFTNDLTGATNTGFSFGYNWGKNTNSPSGYWDNAGIGGTLLTLYPTAIVFDIHAAGNMSSVGGITIASTVLRPNIDNAISGGQSTFRFTQLFATNSTIGTCDADEKMEPVAPNEAEINAFYEISLLPWVWQWLEKYQVEGDNARLHSGPTVQAAIAIMDKHGLDWTRYAAFCYDEWDAWEGGIDPETGKYVAPYEAGHRYGFRKEELLLWMLRAMVEKQKSLEDRILVLENK
Physico‐chemical
properties
protein length:967 AA
molecular weight: 104321,72650 Da
isoelectric point:4,64127
aromaticity:0,10341
hydropathy:-0,19266

Domains

Domains [InterPro]
DC_0194
STR
1–853
DC_0194 Coil
IPR058969
ATT
11–116
IPR058969 IPR011050 IPR036388
IPR012334
STR
271–511
IPR012334 IPR012334 IPR036388
IPR006626
Unmapped
460–482
IPR006626 IPR006626 IPR006626 IPR006626 cd10144
IPR039448
ENZ
460–631
IPR039448 IPR030392
UYL04388.1
1 967
Architecture
STR
ATT
STR
RBD
STR 1-10 | ATT 11-116 | STR 117-853 | RBD 854-967
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
UYL04388.1
1 967
Domain Start End Length (AA) Confidence
N-terminal 1 256 256 0,9902
Central domain 257 680 425 0,9879
C-terminal 681 967 286 0,9496
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-256
Central
257-680
C-terminal
681-967

Taxonomy

  Name Taxonomy ID Lineage
Phage Klebsiella phage KP13-16
[NCBI] 		2985658 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Klebsiella pneumoniae
[NCBI] 		573 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
UYL04388.1 [NCBI]
Genbank nucleotide accession
OP617741.1 [NCBI]
CDS location
range 46044 -> 48947
strand +
CDS
ATGGCAGATAATTTTCCACAATACCCTGCTACTTCATTCGACCAAGCTGTAGATCTTACAATATACGCTAGTAACCAGCTTGGTGATGTAATCAATGGGGATGCAACTTCAGTCGTAAGTACTGAGAGTGGTGATATCCCAACATTAAGAAAAGCTTTAATTGATAATTTTTATTTTAAAAATCCTATTCAATGGAATCCGGGAAATACTAATACAGTCTTTAACCAACTTTATGTTTTTGATACAGATAATATCAATAAAGGTTGGTACTATGCACCTACAGCGACAGCTACAAACCCAATTTTAATGGGTAGCACCCCAGTTGGTGATGCAAACTGGAAGCTTTACTCATTAGTTGCTACAGGGATTCCTGCACAAGTATTTCCTTGGTCAACAGAGATCACCCAGGTAACAAGTTCTATAGTCCCTCCATATGAATTTGATACAGCTATTGTAACGTATAATAGTGGGGTTTTAGTACCAGGCAAAGATTATACTATTGCAAATAATACTATTACTTTTACTCCACCATTATCGCCAGAACCTGACGCAGAAGTCCCTGATATTTTATTTTGTTATATTGGTAAAGTGGAGGAAGGTAATCCTAATATTAACTATGTAACTTATAATAGTTTAGCTGCCCCTACAGCAGCGGATATCATTGGAACAAGTTCCGGTGAAACTGTGCAAACAGTGTTAAATAATAAAATAAATATAAATGAACTTAATTATGTTACGCCGGAAATGTCAGGCTTTGTAACTGGTGTAGGTAACGCTGATGACGATACCGCTGCTATCCAGTGGGCGCTCAATCAGGGGGCGGCACTCGTAGTTTTCGATTCGACAAAAACATATAACATCCAGCCTGGAGTTATTCAGCACACCGGTAAAATCAATGTTGATGCCGGGACAGCTAAAATTGTCTGTGACGGCATAGCTGTTGATATTATTGACGGTGCTGGTTCCGTATGGAAAGGTGGTAACTTACTTAGCAAAACAACTCCGTGGACAGTTGTCTATGACGAAGATTTCAACATTGTTGAAAGCGGAAACCTGGGTTATGGTCGTATGCCATACCAGGACGATGCAAACGTTGATTCTTCTCACTATTACCAGCAAATTTGTTGCTCCCTTGTGTTTCGTTCCTCTACCTCGGACGTTCTTGACGGGTTAACTGTATCTGGTGTGAATGGCAGTTATGCCGCAGTTGTGGCTGCTGGTTTCAAGAATACCAAGTGGACGCATAACAAGATTCGAGGTGGTGCTCTTGCTGGGGCAATCATGGTACTCAATGACTGTGAGTTACCTGTTACGGCTGGTTTTGGATGGAATGCTGGCGTAGACGTGTCTTATGGAAATCCTTTTAAATGGGCGCGTGGAAGCAATCACACCTTTGAAAACTGTGACCTCTTCGAAAGTCGGCAGATGGGTCTTTGCGTCACTGGCTCAGACTGTGTGACCATTTCTAACGTCAACACCTATGATAATGCAGAATCTGGTGTCCAGACAGGTCAATACAGTTCCGCGTACCCACAAGAAAGCATCATCTGTAAGCACGTCATTCAGATAGGGTGTAAATCGTGGGGTAACTATTATGACGGTCTTGACCATGCCTCAGTAACTAGCGGTGCTGCTGGTCCCTACTTCGATAAATACCTTAACGTCTCTAACTGTGAGAGCTTCAATAACCGTGCTACTGGTATATTTGCCCAGGGCAACAATCTTCAAATTAAGGGAAATAACTTTCACGACAATGGCGCTCACGGGATACGGGTTCAGGATTCAGCAGTCGTTGACCTTTCACGTAACCAATGTACCTATAACGGGAGGTTAGCAGGTGGTTATCAAATAGCGGCCGTAGGTTCAGATATGTCTGTGGATGATAACACAGTTTTGAATACCTCGCAGACTGATTCCCACTTAGTCAACATCAGCATTGGATTGCAAACACAAAAACAGTTTGGTGTTAAGTTTAAAAATACACCCCTAAGCACTCGTTCTTCCCCTAAGACTGTCATTGGCATAGGGGTGTTGATGAGCAGTGACGAAAAGACATCAGATGGAAGTGATGCATCTTATTCTGGGGTCAGAGCTTCAGGGTATATTCCGGCCCCCATTGCTGGGGTCACAAGCACAAAGAGTGTAGCTTCAGAGGCAGGAGCAGTTGCCGCATGGAAACACCCGACTACTGGTGCCTGGATGCGGTTGTTTACCAACGACCTGACTGGTGCAACTAACACCGGTTTCTCATTCGGCTATAACTGGGGGAAAAACACAAATAGCCCGTCAGGTTATTGGGATAATGCCGGTATAGGCGGTACGTTACTTACACTTTACCCAACAGCTATTGTATTCGATATACATGCCGCAGGAAACATGTCTAGTGTTGGTGGTATTACGATTGCCTCGACCGTTCTACGTCCTAATATTGATAATGCAATATCGGGCGGCCAATCTACATTCCGTTTTACCCAGTTATTTGCAACCAATAGTACGATAGGTACTTGTGATGCAGATGAAAAAATGGAGCCTGTTGCCCCTAATGAAGCGGAAATTAATGCTTTCTACGAAATAAGTCTGCTGCCTTGGGTGTGGCAGTGGCTTGAAAAATATCAAGTAGAAGGTGATAACGCGAGATTGCACTCAGGGCCAACGGTGCAAGCAGCAATCGCCATAATGGATAAACATGGTCTTGACTGGACTCGCTATGCCGCATTTTGTTATGACGAGTGGGACGCCTGGGAGGGTGGTATTGACCCAGAAACTGGAAAATACGTAGCACCTTATGAAGCTGGTCATCGTTATGGATTCAGGAAAGAAGAACTGCTTCTGTGGATGCTGCGAGCAATGGTGGAGAAACAAAAATCTCTGGAAGACCGAATACTAGTGCTGGAGAATAAATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
45c9dfe9737c151854abef5d3ad8abbc2167b211c13bb1ce575c2b0d9948bd45
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,6634
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Bacteriophage therapy against pathological Klebsiella pneumoniae that determine the clinical course of primary sclerosing cholangitis Ichikawa,M., Nakamoto,N., Kredo-Russo,S., Weinstock,E., Weiner,I.N., Khabra,E., Ben-Ishay,N., Inbar,D., Kowalsman,N., Mordoch,R., Nicenboim,J., Golembo,M., Zak,N.B., Suzuki,T., Miyamoto,K., Teratani,T., Fujimori,S., Aoto,Y., Konda,M., Hayashi,N., Chu,P.-S., Taniki,N., Morikawa,R., Kasuga,R., Tabuchi,T., Sugimoto,S., Mikami,Y., Shiota,A., Bassan,M. and Kanai,T. 2023-06 — GenBank