Protein

View in Explore
Genbank accession
YP_009613060.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence UniProt/TrEMBL
Probability 1,00
TF
Evidence GenBank
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,88
TF
Evidence RBPdetect2
Probability 0,95
Protein sequence
MADLKVGTTIGGSPVWHQGNLALVPSGNAILYKGARIYSENDKPSANELQVVSRAGDTMTGVLNVETSTEYPLALKSSVSGPAYIRFSKGNTLQSYVGTDAAGDFKVAMTDANGSWAFDGLKIAKSNGDVSLKGALVSANTGNFDIKYGSVQFIRANSSKNLYIGAPGGTDLVLGYAQDGMTTTKIRFDSAVYNKTGRLLISDTGLIQRSAMDNPYYNQTEADARFIRLNTNTATNGYLLSKSSDMGTPHNLSMGYSGFFRHNSLGGFSGLTINVSHPSASDGANARGITFDYGSIGYGMYTYAYDSAGTKLANQKIYTEADKPTPAEIGALAAGANAVSASKLQTARTISLTGGATGSVSFDGSSNASLAVTITNNSHTHSDYVKKTGDTMSGNLTVPRVLLSAAQGAEANSAARRDFVESTVTASGKGVKDLLITLPAGAPASGYIPVLFETNGASNSFVFIDTLSGHTTLPMNNCSFTGNVRASGWNDGGSYAYGQFTIYSTSERAIHSIHGPSEGVNGFVVYVETRAFPINVRVDVGTTVTAYATDATYGTSIFKVNGQVSGNTKTIVLANFDKGSGTYNGSSRVYDNGYNPTPEAVGALPVNGNAVTASRLQTARLIAGVPFDGTSNISISATNVGAVAKAGDAMTGGLTFVDAACELGWVFNSDYAKIGFKNASDDDTDSYMWFKTGDNGNEYFKWQSVNGANTTDWMSLKPTGLVVAAGVTAPTFTGALAGNAATATKLATARQINGTNFDGSGNITTANWGTARTLTIGNAAKSVNGAGDVSWSLSEIGALPVAGGTVSGALGVTAELVLVGGSASDMADIVWIAPDGTERGRLWIGGTIGADNSLTWRSGASGATYKIYHEGNKPTASDVGAAPAGFGLGTYGTGISTVLGDCNLRRQSGFFQGPNIAGIPNTEWTYLFNQAHGNAAGFFGYLAINFAGTKAWIGGQEAGAQKGPFELVKQGDRFVANNAVGNDYYQCAIEVNGNPAIDSRPGVGFHMAGRFASTLHLWEGGDFRFHTQGFASYAGIMTGNVNANDVYIRSDRRLKKNFVEVRDALRKVSALTAYSYDKKQTLEATEYDKKEVGLIAQDVEQVLPEAVTRVVDSSNKDGTEILTLSNSALIALLVGAVKELSEKVKELEHGRT
Physico‐chemical
properties
protein length:1152 AA
molecular weight: 120475,33740 Da
isoelectric point:6,07236
aromaticity:0,09115
hydropathy:-0,15885

Domains

Domains [InterPro]
DC_1903
ATT
1–529
DC_1903 DC_0139
DC_1619
ATT
501–681
DC_1619 IPR051577
IPR030392
CHP
1050–1151
IPR030392
IPR030392
CHP
1050–1108
IPR030392
YP_009613060.1
1 1152
Architecture
ATT
STR
ATT 1-681 | STR 733-1151 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_009613060.1
1 1152
Domain Start End Length (AA) Confidence
N-terminal 1 394 394 0,0915
Central domain 395 593 200 0,4922
C-terminal 594 1152 558 0,8287
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-394
Central
395-593
C-terminal
594-1152

Taxonomy

  Name Taxonomy ID Lineage
Phage Aeromonas phage AS-gz
[NCBI] 		2026082 Uroviricota > Caudoviricetes > Pantevenvirales > Tulanevirus > Tulanevirus asgz
Host Aeromonas salmonicida subsp. salmonicida
[NCBI] 		29491 Bacteria > Proteobacteria > Gammaproteobacteria > Aeromonadales > Aeromonadaceae > Aeromonas

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_009613060.1 [NCBI]
Genbank nucleotide accession
NC_042019.1 [NCBI]
CDS location
range 58530 -> 61988
strand +
CDS
ATGGCAGATTTAAAAGTTGGAACCACGATCGGTGGTTCACCTGTTTGGCACCAAGGCAATCTTGCACTGGTACCAAGCGGTAATGCTATCCTGTACAAGGGTGCAAGAATTTATTCGGAAAACGATAAACCGAGTGCAAATGAACTCCAAGTAGTATCTCGTGCTGGCGATACTATGACTGGCGTTCTGAACGTTGAAACGTCTACTGAATACCCATTGGCGCTTAAATCGAGCGTTAGTGGTCCTGCTTATATTCGTTTTTCAAAGGGAAATACGCTTCAGTCATATGTTGGAACTGATGCTGCTGGTGACTTTAAAGTCGCAATGACTGACGCCAACGGTTCATGGGCATTTGATGGGCTTAAAATCGCTAAATCTAACGGCGATGTTTCTCTGAAAGGAGCGTTGGTATCCGCTAACACTGGAAACTTTGATATAAAGTATGGAAGTGTCCAGTTCATTCGAGCAAACTCGTCTAAAAACCTGTATATTGGCGCACCTGGTGGAACTGATTTAGTACTCGGTTATGCCCAAGATGGAATGACTACCACTAAAATTCGCTTTGATTCCGCCGTATACAATAAGACGGGCAGACTTTTGATTAGCGACACCGGTCTTATCCAACGCTCTGCTATGGATAATCCATACTATAATCAGACCGAGGCTGATGCACGATTTATCAGACTGAACACCAATACTGCGACTAATGGTTACTTGCTGAGCAAATCGTCTGATATGGGAACACCTCATAACTTGTCAATGGGCTATTCCGGATTCTTCAGACATAACAGTCTGGGCGGATTCAGTGGATTGACTATTAACGTTTCTCATCCATCGGCCAGTGACGGTGCGAATGCCCGTGGTATTACTTTCGATTACGGAAGTATCGGTTATGGTATGTACACATACGCATACGACTCGGCAGGCACTAAATTAGCAAACCAAAAGATTTATACCGAAGCTGATAAACCTACTCCTGCAGAAATTGGTGCATTAGCTGCCGGTGCAAATGCTGTATCTGCATCAAAGTTGCAAACCGCAAGAACTATCAGTTTGACCGGAGGAGCAACTGGCTCAGTGTCATTCGATGGTAGTTCAAATGCTTCTCTAGCAGTGACCATAACAAATAACAGCCATACGCACTCCGATTACGTCAAAAAAACCGGCGACACCATGTCTGGCAATTTGACTGTTCCAAGAGTTCTTTTGTCTGCCGCGCAGGGCGCCGAAGCTAATTCTGCAGCTCGTCGTGATTTCGTTGAATCGACTGTTACTGCTTCTGGCAAAGGTGTTAAAGATCTTTTGATCACACTTCCTGCTGGAGCACCTGCTTCAGGATATATTCCAGTTCTTTTTGAAACAAATGGTGCATCCAACTCATTTGTCTTTATCGATACTTTATCTGGCCATACAACACTTCCAATGAACAATTGTTCATTTACTGGTAATGTTCGCGCCAGTGGATGGAATGATGGCGGAAGTTATGCGTATGGCCAGTTTACGATTTATTCTACATCAGAAAGAGCAATACATTCAATCCACGGGCCGTCTGAGGGCGTAAATGGGTTTGTTGTTTACGTTGAAACACGTGCTTTCCCGATAAATGTAAGAGTTGATGTCGGAACAACCGTCACAGCTTACGCTACTGATGCTACATACGGGACATCCATTTTCAAGGTTAATGGCCAAGTCAGCGGAAATACAAAAACCATTGTTCTTGCGAATTTTGATAAAGGCTCTGGGACTTATAACGGAAGCAGTCGTGTTTACGATAATGGATATAACCCAACTCCAGAAGCAGTAGGAGCTCTTCCAGTCAATGGAAATGCTGTAACAGCTTCTAGATTGCAGACAGCTAGACTTATTGCAGGTGTTCCATTTGATGGCACATCGAATATTTCGATTTCTGCAACTAACGTTGGTGCGGTTGCTAAAGCTGGCGATGCAATGACCGGTGGGCTTACGTTCGTCGATGCTGCCTGCGAGCTGGGCTGGGTCTTCAATTCTGATTACGCGAAGATTGGTTTCAAGAATGCCTCTGACGACGACACCGACAGCTACATGTGGTTCAAAACCGGGGATAACGGTAACGAATACTTCAAGTGGCAGAGTGTAAACGGAGCGAACACTACCGATTGGATGTCACTAAAGCCTACAGGGCTGGTCGTGGCTGCTGGGGTGACCGCTCCGACATTCACGGGCGCTCTTGCTGGCAATGCGGCCACGGCAACCAAGCTGGCTACGGCTCGCCAGATTAACGGCACCAACTTTGACGGTTCCGGCAACATCACCACGGCGAACTGGGGTACAGCCCGCACCCTGACTATCGGCAACGCTGCTAAGTCCGTTAACGGTGCGGGTGACGTGTCTTGGTCGCTGTCTGAAATCGGGGCTCTGCCTGTTGCTGGTGGGACTGTATCCGGGGCGTTAGGAGTTACAGCGGAACTTGTCCTTGTGGGGGGCTCTGCTAGTGACATGGCGGACATTGTGTGGATAGCACCTGATGGCACTGAGCGAGGGCGCCTGTGGATTGGGGGCACGATAGGGGCTGATAACTCTCTCACATGGCGTAGTGGCGCAAGTGGGGCTACCTACAAGATTTACCATGAAGGGAACAAGCCGACTGCCTCGGATGTTGGTGCGGCTCCGGCAGGATTTGGTCTTGGGACGTACGGAACTGGCATTTCCACAGTTTTGGGCGATTGTAATCTCCGTCGTCAATCTGGATTCTTCCAAGGACCCAACATTGCGGGCATTCCAAATACTGAATGGACATATCTCTTCAACCAAGCTCACGGAAACGCAGCAGGATTCTTCGGATACTTGGCTATCAACTTTGCTGGAACTAAAGCGTGGATTGGCGGACAGGAGGCCGGTGCCCAGAAAGGGCCTTTCGAGCTGGTGAAACAAGGCGACAGGTTTGTGGCAAATAATGCCGTGGGAAACGACTACTACCAGTGCGCTATCGAGGTGAACGGTAACCCCGCTATCGACAGTCGCCCGGGCGTCGGGTTCCACATGGCAGGCCGCTTTGCCAGTACGTTACACCTGTGGGAGGGAGGGGACTTCCGCTTCCACACACAAGGATTCGCTTCGTATGCAGGGATTATGACAGGGAATGTGAACGCGAATGACGTTTACATCCGGTCAGACCGGCGACTTAAGAAGAACTTTGTGGAAGTACGTGACGCGCTACGGAAAGTGTCAGCACTGACCGCCTACTCCTACGACAAGAAGCAGACGCTTGAAGCCACCGAGTACGACAAAAAAGAGGTCGGATTGATTGCACAAGACGTCGAGCAGGTGCTACCCGAAGCTGTTACTCGTGTAGTGGATTCAAGTAACAAAGACGGGACCGAAATCCTGACGCTATCAAACTCCGCATTGATTGCGCTACTGGTGGGGGCGGTCAAGGAACTCTCTGAGAAGGTGAAGGAGTTGGAACATGGCCGTACCTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
fa7fe4f1ad21beea494e9d7d67f7dd50af379cd746e214565fd8f078fc482167
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,5424
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
In vitro design and evaluation of phage cocktails against multidrug-resistant Aeromonas salmonicida Chen,L., Yuan,S. and Ma,Y. 2018-07-06 — GenBank