Protein

View in Explore
Genbank accession
YP_009126354.1 [GenBank]
Protein name
tail collar fiber protein
RBP type
TF
Evidence UniProt/TrEMBL
Probability 1,00
TF
Evidence GenBank
Probability 1,00
TF
Evidence RBPdetect
Probability 0,91
Protein sequence
MQNNTLKHISDESKYVTFDPTNSGFNENITNVQDALSAISVDGISGVPQATETVAGKARIATQLEVDAGVSADTFITPATLSYRMQRPEASTTVLGVTQYATDEEAIAGTATNRTIVASSLKATIDNVFTVRTSTETSNGVLKISSTPAAQAGVDDTTAMTPLKTKQAIAAATALIPAWGPATESEQGVVRLATLSQLRDPNIRDGYSVSPFTLNQWQSTESNLGAIKLATSGHMDGGSDHTTAVTPYRFASTRATTGRAGTTILSNDLNGDGSKALSANSAVLPSNRAAVSAGVYEHDTAADNKYMTRNNLKAYLPVGTMTLAAYNYDTGNCLKCNGRWLNKHQWPELFAVIGFTYGGDWGDNFAIPDMRGLVPRGFDDGRGLDPGRGFGSYQEDTMQQITAGWTMDDQAVTSNYPPSGACEARDYGSVNYDASSDDRKWRGFRMYFDSARQTRVSHETRQKNLALNYVIVAR
Physico‐chemical
properties
protein length:474 AA
molecular weight: 50882,64330 Da
isoelectric point:5,37358
aromaticity:0,07806
hydropathy:-0,40759

Domains

Domains [InterPro]
DC_0176
STR
1–450
DC_0176
IPR037053
ATT
305–371
IPR037053
SSF88874
STR
309–471
SSF88874
IPR011083
ATT
319–375
IPR011083
YP_009126354.1
1 474
Architecture
STR
ATT
STR
STR 1-304 | ATT 305-375 | STR 376-471 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Taxonomy

  Name Taxonomy ID Lineage
Phage Salmonella phage STP4-a
[NCBI] 		1445860 Uroviricota > Caudoviricetes > Pantevenvirales > Tevenvirinae > Gelderlandvirus
Host Salmonella typhimurium
[NCBI] 		90371 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_009126354.1 [NCBI]
Genbank nucleotide accession
NC_026607 [NCBI]
CDS location
range 80849 -> 82273
strand +
CDS
ATGCAAAACAACACTCTAAAACACATATCAGATGAATCCAAATATGTAACATTTGACCCAACTAATAGTGGTTTTAATGAAAATATAACTAATGTGCAGGATGCTTTATCTGCTATTAGCGTTGATGGTATTTCAGGAGTTCCACAAGCTACAGAAACCGTCGCAGGTAAAGCTAGAATTGCAACTCAATTGGAAGTCGATGCTGGTGTTTCTGCGGATACATTTATAACACCAGCAACGTTATCATATAGGATGCAACGTCCAGAAGCGAGTACAACTGTACTTGGTGTAACTCAATATGCAACTGATGAAGAGGCTATAGCTGGAACTGCTACAAACCGCACTATTGTTGCGTCATCGTTGAAGGCTACTATAGACAATGTTTTTACAGTTAGAACATCAACTGAAACTTCCAATGGTGTTTTAAAAATATCATCTACGCCAGCTGCTCAAGCTGGCGTAGATGACACCACAGCAATGACACCATTAAAAACCAAACAAGCTATAGCTGCAGCAACTGCTCTTATTCCAGCTTGGGGACCTGCTACTGAATCAGAGCAAGGTGTAGTTCGTTTGGCAACATTGTCTCAATTAAGAGACCCTAATATAAGAGACGGTTATTCAGTGTCTCCATTTACGTTGAATCAGTGGCAATCTACTGAGTCAAATTTAGGTGCTATTAAGCTTGCAACATCAGGTCATATGGATGGAGGTTCTGACCATACAACTGCTGTAACTCCATATCGTTTTGCTTCCACTAGAGCGACAACGGGAAGAGCAGGGACAACTATTTTGTCCAATGATTTGAATGGAGATGGTTCTAAAGCATTATCAGCTAACTCAGCAGTTCTTCCAAGTAATAGGGCAGCGGTATCAGCTGGAGTATATGAACATGATACTGCCGCTGATAACAAGTACATGACACGAAATAATCTTAAAGCTTATTTACCTGTTGGTACTATGACACTTGCTGCTTATAATTACGACACCGGTAATTGCTTGAAATGTAATGGTCGTTGGTTAAATAAGCATCAATGGCCTGAATTATTTGCTGTCATTGGATTTACTTATGGCGGAGATTGGGGAGATAACTTTGCTATTCCTGATATGCGCGGCTTAGTTCCACGCGGATTTGATGATGGGCGTGGTCTTGACCCAGGGCGAGGTTTTGGCAGTTATCAAGAAGATACGATGCAGCAAATAACTGCTGGATGGACAATGGATGACCAAGCAGTAACTTCAAACTATCCTCCTTCGGGAGCATGTGAAGCTAGAGATTATGGCTCTGTCAACTATGACGCAAGTTCTGATGATAGAAAATGGCGCGGATTTAGAATGTATTTCGACTCAGCTAGACAAACTCGAGTTTCTCATGAAACTCGCCAGAAGAACCTTGCACTTAACTATGTAATTGTAGCTCGATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
6a3a913c818037b72dd44ba08f89f28574dd0855d2c032add16cede7fa4e4cc1
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7483
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Genomic characterization of STP4-a, a novel T4 virulent phage infecting Salmonella Li,M., Wang,J., Lin,H. and Han,F. 2015-11-13 — GenBank