Protein

View in Explore
Genbank accession
YP_010669912.1 [GenBank]
Protein name
hypothetical protein
RBP type
TSP
Evidence RBPdetect
Probability 0,89
Protein sequence
MSLSFDDIAIQHQLNVGMGVVPFFGLGPARVRGAAYIEGPLNVGTPFAINMGAVNIGPLINPDSPPPFIPGGFCYGPPANPFSLAVLGSVGILGDLNIATNVIIGGNLFVQGLVLGSCGGHLLQIKKNFDIPHPSKEGWRLRHTCPEAPYNDVYIRGRVTNQKEINLPAYWKDFVDVRSITVNLTPVGSHQNVIVKRIDENKIYLQSNGGMPIDCFYHIYAERKDGEKLIPEYPGQSPADYPGDNSGYSIAGYNYDVR
Physico‐chemical
properties
protein length:258 AA
molecular weight: 28011,62940 Da
isoelectric point:6,04746
aromaticity:0,10078
hydropathy:-0,08372

Domains

Domains [InterPro]

No domain annotations available.

Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_010669912.1
1 258
Domain Start End Length (AA) Confidence
N-terminal 1 31 31 0,9486
Central domain 32 230 200 0,0690
C-terminal 231 258 27 0,7648
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-31
Central
32-230
C-terminal
231-258

Taxonomy

  Name Taxonomy ID Lineage
Phage Synechococcus phage S-SCSM1
[NCBI] 		2588487 Uroviricota > Caudoviricetes > Pantevenvirales > Zhoulongquanvirus > Zhoulongquanvirus esscess
Host Synechococcus sp. WH 7803
[NCBI] 		32051 Bacteria > Cyanobacteria > Oscillatoriophycideae > Chroococcales > Synechococcus >

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_010669912.1 [NCBI]
Genbank nucleotide accession
NC_070962 [NCBI]
CDS location
range 173631 -> 174407
strand +
CDS
ATGTCTTTATCATTTGACGATATAGCAATTCAACATCAACTTAATGTTGGTATGGGTGTTGTTCCATTCTTTGGTTTGGGACCTGCACGTGTTCGTGGTGCAGCATACATTGAAGGTCCACTAAATGTTGGCACACCCTTTGCAATTAATATGGGTGCTGTCAATATTGGTCCTCTTATTAATCCAGATTCACCACCACCATTTATTCCTGGTGGATTCTGCTATGGACCACCAGCAAATCCATTTTCACTTGCAGTTTTAGGAAGTGTAGGAATTCTTGGTGATCTTAACATTGCGACTAATGTAATTATTGGTGGTAATTTATTTGTTCAAGGATTGGTCCTTGGCAGTTGTGGTGGTCATTTGTTACAAATTAAAAAGAACTTTGACATTCCTCACCCATCAAAGGAAGGTTGGAGACTGAGGCATACTTGTCCAGAAGCACCTTACAATGATGTATACATCCGAGGGAGAGTTACTAATCAAAAAGAGATCAATCTTCCTGCATATTGGAAAGACTTTGTTGATGTAAGAAGCATCACAGTAAATCTAACTCCAGTTGGATCTCATCAAAACGTTATAGTAAAACGTATTGATGAAAATAAAATTTATCTACAATCAAATGGTGGAATGCCAATCGATTGTTTCTATCACATCTATGCTGAACGCAAAGATGGTGAAAAACTAATTCCAGAATACCCAGGTCAATCACCAGCAGATTACCCAGGTGATAATAGTGGTTATTCTATTGCTGGATATAACTACGACGTTCGATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
7b48ad6473c7339be87987f79a4d5d5e97a7f9108310bfad2598c200f98d701f
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,5924
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Genomic and proteomic characterization of cyanophage S-SCSM1 provides new insights into understanding the viral gene diversity and phage-host interactions Wang,Q., Xu,Y., Jiao,N. and Zhang,R. 2022-10-26 — GenBank