Protein

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Genbank accession
NP_996718.1 [GenBank]
Protein name
head protein
RBP type
TSP
Evidence RBPdetect
Probability 0,73
Protein sequence
MTQYSFPWNDVHGDRLYDADDFMRFFAAFLKTGVVMSFKDGLRVRSTKNGMNIQVGSGSAVIDGGSYLNDKAIGIQVNVASSIQERMDSVVLRMDKNARTTQLFYKPGDTTVARNDTTYELQLAKISVKNNATQITDADITDMRSDFTVCGWSTPFDNINVDGIVDQYKEIFEQKDLEFQAWFKNLKKQLDDNQASNLQNQIDNLGNEKANDHEVVHKTGDESIAGKKTFTGNVEVNGSLTLPTKSWSGELGGGITLSLRKKGTTVEYSIGGEISSKILVNSNLVNLSVPNEFCPRNRCSLVGHMAGGWNAFHIDIPSSGVCQWFGPTASSGTPRGTGTYPID
Physico‐chemical
properties
protein length:343 AA
molecular weight: 37713,71280 Da
isoelectric point:5,47265
aromaticity:0,08746
hydropathy:-0,42012

Domains

Domains [InterPro]
DC_1002
STR
1–288
DC_1002
Coil
Unmapped
188–208
Coil IPR040956 G3DSA:2.60.40.1830
G3DSA:6.10.140.2190
STR
198–239
G3DSA:6.10.140.2190 IPR008982
SSF69349
STR
198–241
SSF69349 cd07964
IPR015027
RBD
246–341
IPR015027
NP_996718.1
1 343
Architecture
STR
RBD
STR 1-288 | RBD 289-343
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
NP_996718.1
1 343
Domain Start End Length (AA) Confidence
N-terminal 1 228 228 0,9965
Central domain 229 332 105 0,0172
C-terminal 333 343 10 0,9950
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-228
Central
229-332
C-terminal
333-343

Taxonomy

  Name Taxonomy ID Lineage
Phage Lactococcus phage phiLC3
[NCBI] 		12390 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Lactococcus cremoris
[NCBI] 		1359 cellular organisms > Bacteria > Bacillati > Bacillota > Bacilli > Lactobacillales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
NP_996718.1 [NCBI]
Genbank nucleotide accession
NC_005822 [NCBI]
CDS location
range 25919 -> 26950
strand +
CDS
ATGACACAATATAGTTTTCCGTGGAACGACGTACACGGAGATCGGCTTTATGACGCAGATGATTTCATGCGATTTTTTGCAGCATTCTTGAAAACAGGAGTTGTAATGTCTTTTAAAGATGGATTACGAGTCCGCTCTACTAAGAATGGAATGAATATTCAAGTAGGAAGTGGTTCAGCAGTTATTGATGGAGGCTCTTACCTTAATGATAAAGCTATTGGAATACAAGTTAACGTGGCATCATCAATTCAAGAACGCATGGACTCTGTTGTTTTGAGAATGGATAAGAATGCAAGAACGACTCAATTATTTTATAAACCAGGAGATACAACGGTTGCTCGTAATGACACAACATATGAATTACAATTGGCAAAAATTTCTGTAAAAAATAATGCTACTCAAATTACTGATGCGGATATTACAGATATGCGTAGTGATTTTACGGTATGTGGGTGGTCTACTCCGTTTGATAATATCAATGTTGATGGAATTGTAGACCAATACAAGGAGATATTTGAACAAAAAGACTTGGAATTTCAAGCATGGTTTAAGAATTTAAAAAAACAACTGGATGATAATCAAGCCTCAAATTTGCAAAATCAAATTGATAATCTAGGTAATGAGAAAGCTAATGATCATGAGGTTGTTCATAAAACTGGTGACGAATCAATTGCTGGTAAAAAGACGTTTACTGGTAACGTTGAAGTAAATGGAAGCTTAACACTTCCAACCAAATCATGGTCTGGAGAACTCGGAGGTGGGATCACTCTTAGCTTACGGAAGAAAGGGACTACAGTTGAATATTCAATTGGTGGGGAAATATCCTCTAAAATTCTTGTAAATTCCAATTTAGTAAATCTCAGTGTTCCAAATGAATTTTGTCCCAGAAATAGGTGTTCCCTTGTAGGTCATATGGCTGGTGGTTGGAATGCATTTCATATTGACATTCCATCAAGTGGAGTATGTCAGTGGTTTGGTCCAACTGCGAGCAGTGGTACTCCTCGTGGGACTGGTACATATCCAATAGATTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
7aef9015bcea1685516ac2c8b4364a57e70162ca82546a760b95201d91471ca4
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,8581
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Complete genome sequence of the Lactococcus lactis temperate phage phiLC3: comparative analysis of phiLC3 and its relatives in lactococci and streptococci Blatny,J.M., Godager,L., Lunde,M. and Nes,I.F. 2004 14972551 GenBank
Transcriptional analysis of the genetic elements involved in the lysogeny/lysis switch in the temperate lactococcal bacteriophage phiLC3, and identification of the Cro-like protein ORF76 Blatny,J.M., Ventura,M., Rosenhaven,E.M., Risoen,P.A., Lunde,M., Brussow,H. and Nes,I.F. 2003 12759744 GenBank
Analysis of a regulator involved in the genetic switch between lysis and lysogeny of the temperate Lactococcus lactis phage phi LC3 Blatny,J.M., Risoen,P.A., Lillehaug,D., Lunde,M. and Nes,I.F. 2001 11370866 GenBank
A highly efficient and stable system for site-specific integration of genes and plasmids into the phage phiLC3 attachment site (attB) of the Lactococcus lactis chromosome Lillehaug,D., Nes,I.F. and Birkeland,N.K. 1997 9099871 GenBank
Cloning, molecular characterization, and expression of the genes encoding the lytic functions of lactococcal bacteriophage phi LC3: a dual lysis system of modular design Birkeland,N.K. 1994 7922887 GenBank
Characterization of genetic elements required for site-specific integration of the temperate lactococcal bacteriophage phi LC3 and construction of integration-negative phi LC3 mutants Lillehaug,D. and Birkeland,N.K. 1993 8449882 GenBank
The cos region of lactococcal bacteriophage phi LC3 Birkeland,N.K. and Lonneborg,A.M. 1993 8161824 GenBank
Characterization of phiLC3, a Lactococcus lactis subsp. cremoris temperature bacteriophage with cohesive single-stranded DNA ends Lillehaug,D., Lindqvist,B. and Birkeland,N.K. 1991 1840480 GenBank