Protein

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Genbank accession
QVD48988.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence Phold
Probability 1,00
Protein sequence
MEFPKTYDSGLTIVGVHSPSWTDAEKIRINCVIKVELKDASGEPVVEEWPFTACPWDTFGPHCPEIFRHLAEGGAGPVAEWVRPEVTVADLQAEFDRIWPDVALGLADQATIDLAKNLRVQIKAMS
Physico‐chemical
properties
protein length:126 AA
molecular weight: 13944,72380 Da
isoelectric point:4,64974
aromaticity:0,08730
hydropathy:-0,09048

Domains

Domains [InterPro]

No domain annotations available.

Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Taxonomy

  Name Taxonomy ID Lineage
Phage Pseudomonas phage vB_Pci_PCMW57
[NCBI] 		2834275 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Pseudomonas cichorii
[NCBI] 		36746 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Pseudomonadales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
QVD48988.1 [NCBI]
Genbank nucleotide accession
MW812345.1 [NCBI]
CDS location
range 36343 -> 36723
strand +
CDS
ATGGAATTCCCGAAGACTTACGACTCGGGCCTGACCATCGTGGGCGTTCATTCGCCCTCATGGACAGACGCTGAGAAAATCCGCATCAACTGCGTCATCAAGGTGGAACTCAAGGATGCCTCTGGGGAACCAGTGGTAGAAGAATGGCCCTTCACGGCCTGCCCTTGGGACACCTTCGGTCCGCACTGTCCTGAAATCTTCCGTCACCTCGCTGAAGGTGGTGCTGGTCCGGTAGCTGAGTGGGTCCGCCCTGAAGTGACCGTGGCCGATCTGCAAGCCGAGTTTGACCGTATCTGGCCCGACGTGGCGCTGGGTCTGGCCGATCAGGCAACCATCGACCTCGCTAAGAATCTGCGCGTTCAGATCAAGGCGATGAGCTGA

Genome Context

Genome Context

Tertiary structure

PDB ID
cbd9aba28b1ed37b708318ea38e983e223223bccab11cc6183b2033ddeefe493
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,9349
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Isolation and characterization of a virulent bacteriophage specific for Pseudomonas cichorii Alves,M.K., de Souza,W.V., Novello,J.C.L., Sillankorva,S., Henriques,J.A.P. and Ely,M.R. 2023-06-16 — GenBank