Protein

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Genbank accession

YP_008239575.1 [GenBank]

Protein name

tail fiber protein

RBP type

TSP

Evidence DepoScope

Probability 1,00

Evidence GenBank

Probability 1,00

Evidence Phold

Probability 1,00

Evidence RBPdetect

Probability 0,91

Evidence RBPdetect2

Probability 0,96

Evidence UniProt/TrEMBL

Probability 1,00

Protein sequence

MSTKFKTVITTAGAAKLAAATVPGGKKINLNVMAVGDGGGKLPVPDAGQTQLVNEVWRHTLNKISQDNRYSNYIVAELVIPPEVGGFWMRELGLYDDEGTLIAVANMAESYKPELAEGSGRAQTCRMVIIVSSVESVALSIDSTMVMATQDYVDDRLAEHEKSRRHPDATLKEKGFTQLSNATDSESETLAATPKAVKAAYDLADGKYTAQDATTTRKGIVQLSNATDSVSETLAATPKAVKVAYDLANAKYTAQDATTARKGIIQLSNATDSTSETLAATPKAVKAAMDNANGRVPSDRKVNGHPLSGDITLWASDVKAISADAIGQITDNGTMASANTPGWWRVAVSNSDTVADFPTYPDGSKLYSYGYMFVEKIGEVWFQHYYAHMGANAKRQDWGTEPNTSRQWVIDYNTVNKPSASDVGALPITGGRLNGPLGIGTDNVLGGNSIVFGDNDTGFKWHSDGVLGIYANSAQVGYIDNSGLHMLADIRATGVVRTGNGKTLTLSSGNNSALNAGLSLWGGGERPTVIELSDEQGWHLYSQRNTDGSISFTVNGIVYCNALNIGGAIYQNNGDIFGSLWGNGWLSTWIHNNVVKAVRLGPVALSGGLWRDFQLGGGQVVTGFHTDGSWEMEGGDDKVYYRPIQYLVGDAWVTAPSV

Physico‐chemical properties

protein length:	658 AA
molecular weight:	70163,40050 Da
isoelectric point:	5,32800
aromaticity:	0,08055
hydropathy:	-0,25866

Domains

Domains [InterPro]

IPR051934
Unmapped
1–201

IPR051934 IPR005068 IPR005068 DC_1942 G3DSA:6.20.70.20 DC_2105

IPR022225
ATT
1–151

IPR022225 IPR005068 DC_1371

DC_1371
STR
1–251

DC_1371

YP_008239575.1

1 658

Architecture

ATT

STR

ATT

RBD

ATT 1-151 | STR 152-416 | ATT 420-490 | RBD 564-658

Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Domains [InterPro]

Domain ID	Category	Cluster	Start	End	Layer	Name	Pref Zone	Confidence	Evidence	Support
IPR051934	Unmapped	-	1	201	InterPro	Bacteriophage Tail Fiber Structural Protein	-	-	-	-
IPR022225	ATT	DC_0271	1	151	InterPro cluster	Phage tail fibre protein, N-terminal domain	Central	Medium	Text match	271 proteins / 271 hits
DC_1371	STR	DC_1371	1	251	Novel HMM	DC_1371	Central	Low	Positional only	130 proteins / 130 hits
IPR005068	STR	DC_0738	170	211	InterPro cluster	Bacteriophage lambda, Tail fiber protein, repeat-2	Central	High	Text match	217 proteins / 347 hits
IPR005068	STR	DC_0738	214	255	InterPro cluster	Bacteriophage lambda, Tail fiber protein, repeat-2	Central	High	Text match	217 proteins / 347 hits
DC_1371	STR	DC_1371	228	416	Novel HMM	DC_1371	Central	Low	Positional only	130 proteins / 130 hits
IPR005068	STR	DC_0738	258	297	InterPro cluster	Bacteriophage lambda, Tail fiber protein, repeat-2	Central	High	Text match	217 proteins / 347 hits
DC_1942	ATT	DC_1942	420	490	Novel HMM	DC_1942	N-terminal	Low	Positional only	254 proteins / 254 hits
G3DSA:6.20.70.20	RBD	G3DSA:6.20.70.20	564	593	Merged direct domain	G3DSA:6.20.70.20	C-terminal	Low	Positional only	31 proteins / 31 hits
DC_2105	RBD	DC_2105	594	658	Novel HMM	DC_2105	C-terminal	Low	Positional only	20 proteins / 20 hits

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout

N-terminal

Central

C-terminal

YP_008239575.1

1 658

Domain	Start	End	Length (AA)	Confidence
N-terminal	1	437	437	0,7392
Central domain	438	636	200	0,3214
C-terminal	637	658	21	0,9988

Note: Constraints were applied during segmentation.
Fixed 108 C-terminal predictions appearing before Central domain

Legend: N-terminal Central domain C-terminal

3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring

N-terminal
1-437

Central
438-636

C-terminal
637-658

Taxonomy

	Name	Taxonomy ID	Lineage
Phage	Salmonella phage FSLSP004 [NCBI]	1173769	Uroviricota > Caudoviricetes > Peduoviridae > Peduovirus FSLSP004 > Stockinghallvirus FSLSP004
Host	Salmonella enterica [NCBI]	28901	cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales
Host	Salmonella enterica subsp. enterica serovar Newport [NCBI]	108619	Bacteria > Proteobacteria > Gammaproteobacteria > Enterobacteriales > Enterobacteriaceae > Salmonella

Coding sequence (CDS)

Genbank protein accession

YP_008239575.1 [NCBI]

Genbank nucleotide accession

NC_021774.1 [NCBI]

CDS location

range 11383 -> 13359
strand +

CDS

ATGAGCACGAAATTTAAAACCGTTATCACCACTGCCGGAGCTGCCAAGCTCGCCGCAGCCACCGTGCCGGGCGGTAAGAAAATAAATCTTAACGTTATGGCTGTTGGTGACGGCGGCGGAAAACTGCCGGTGCCTGATGCCGGTCAGACGCAGCTTGTTAATGAGGTGTGGCGTCATACGCTGAATAAAATCAGCCAGGATAACCGTTACAGTAATTACATTGTGGCCGAACTGGTTATTCCGCCGGAGGTGGGCGGCTTCTGGATGCGTGAGCTTGGCCTTTACGACGATGAAGGGACGCTGATTGCTGTTGCCAATATGGCCGAAAGCTACAAGCCAGAACTGGCTGAGGGCTCAGGGCGTGCGCAGACATGCCGCATGGTCATTATTGTCAGCAGTGTCGAGTCTGTGGCGCTGTCCATTGACTCAACGATGGTGATGGCGACGCAGGATTATGTCGACGACAGACTCGCCGAACATGAAAAATCCCGTCGTCATCCTGATGCCACTCTTAAAGAAAAAGGGTTTACTCAGCTCAGTAACGCGACAGACAGCGAGTCTGAAACGCTCGCAGCGACGCCGAAAGCTGTTAAGGCAGCATACGACCTTGCTGACGGGAAATATACAGCGCAGGACGCCACCACAACGCGTAAAGGGATTGTACAACTCAGTAATGCCACTGACAGTGTGTCTGAGACGCTTGCCGCGACACCGAAAGCGGTCAAAGTGGCATATGACCTTGCTAACGCGAAATATACAGCTCAGGACGCCACTACAGCGCGTAAAGGGATTATCCAGCTCAGCAATGCCACTGACAGCACGTCTGAGACGCTGGCCGCAACGCCGAAAGCGGTTAAAGCGGCTATGGATAATGCGAACGGGCGTGTCCCGTCAGACCGTAAGGTCAATGGGCATCCATTATCCGGGGATATCACCCTGTGGGCGTCAGATGTGAAGGCTATTTCCGCCGATGCCATTGGACAGATTACCGATAACGGCACGATGGCATCAGCTAATACTCCAGGATGGTGGCGGGTGGCGGTGTCGAATTCTGATACGGTCGCTGATTTTCCGACCTATCCGGATGGCAGCAAGCTGTACAGCTACGGATATATGTTTGTTGAGAAAATTGGAGAAGTCTGGTTTCAGCACTATTACGCGCATATGGGCGCGAACGCAAAGCGCCAGGACTGGGGAACGGAACCGAATACCAGCCGTCAGTGGGTTATTGACTACAACACCGTAAATAAACCTTCAGCCAGTGATGTGGGTGCATTGCCGATTACCGGGGGGCGGCTTAACGGCCCACTGGGTATTGGTACTGACAATGTACTGGGCGGTAATTCGATTGTATTCGGCGATAACGATACAGGGTTTAAGTGGCACAGTGACGGCGTTCTGGGTATTTATGCCAATAGTGCCCAGGTCGGTTATATCGACAATTCCGGGCTGCACATGCTGGCAGATATTCGCGCTACTGGTGTCGTGCGCACCGGCAACGGAAAAACACTGACGTTATCGAGTGGTAACAATTCTGCACTGAATGCTGGTTTAAGTCTGTGGGGAGGTGGAGAACGTCCAACAGTCATTGAGCTGAGCGATGAACAGGGATGGCATTTATACAGTCAACGAAATACGGACGGAAGTATTTCATTTACTGTTAACGGTATCGTCTACTGTAACGCGTTAAATATAGGTGGCGCTATTTATCAGAATAACGGTGATATCTTTGGTTCGTTATGGGGAAATGGCTGGTTAAGTACATGGATTCACAACAATGTAGTAAAAGCGGTCAGACTTGGCCCCGTGGCGCTTTCTGGCGGTCTGTGGCGTGATTTTCAGCTTGGCGGCGGACAGGTGGTGACGGGGTTCCATACTGACGGTAGCTGGGAAATGGAAGGTGGTGATGACAAGGTTTATTACCGTCCAATTCAGTATCTGGTTGGTGATGCGTGGGTGACAGCCCCAAGTGTATAA

Genome Context

Tertiary structure

PDB ID

1db51e40581a0eede9065da8ac684d0698ae2309b95143a69c77158b4ffcfbd1

ESMFold

Source ESMFold

Method ESMFold

Resolution 0,7846

Oligomeric State monomer

Download PDB

Model Confidence

Very high
pLDDT > 90

High
90 > pLDDT > 70

Low
70 > pLDDT > 50

Very low
pLDDT < 50

Protein

Domains

Domains [InterPro]

Domains [InterPro]

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

3D Structure with Domain Coloring

Domain Coloring

Taxonomy

Coding sequence (CDS)

Coding sequence (CDS)

Genome Context

Genome Context

Tertiary structure

Predicted Aligned Error (PAE)

Model Confidence