Protein

View in Explore
UniProt accession
A0A1L2JY41 [UniProt]
Protein name
Rhamnogalacturonase A/B/Epimerase-like pectate lyase domain-containing protein
RBP type
TSP
Evidence Phold
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,90
TSP
Evidence RBPdetect2
Probability 0,95
Protein sequence
MMTTIINVKDYGAVGDGITDDTQAIQNAINAAFNNKSYIKGVSGETYLISSINLPAGFYDFRGVTFLSNGSLSGNSYVINCQEGVNVNELKIVVPTTNTLERVLSINSNSIIDFINIISETQHSNSNDLLDSCVIVSGNNIHIKQISIKNFDNSVCFYDVTDSHIQQINCENYKRGVYIRKSANLYIDNLQTKGKSVTSSYTAGHNGLLIEDSELIFIKNTFIQDAGEHGIRIGGVRDKTYSQSNMYFDSIITKRCGGCGFKVYSGAINDSPTTIRYININSLVTVDCSYNQSPARNKDGLYIANGADIKINNFRCYTETTNVSSYSGIYLSGVDRLYIGNVEIRGSANTGITIDLNYGRVNEVFMDNVNIKSVKNEGILINHSGEVLRDLIFKNVFIREFGTNYYGVKVVASLIYQPVLFSGFVAKNNSLGAFTSNGSFNNLYNNLTLLS
Physico‐chemical
properties
protein length:451 AA
molecular weight: 49680,18590 Da
isoelectric point:6,10078
aromaticity:0,09978
hydropathy:-0,11242

Domains

Domains [InterPro]
IPR012334
STR
1–411
IPR012334
IPR012334
STR
1–410
IPR012334
IPR011050
STR
3–446
IPR011050
IPR024535
ENZ
5–195
IPR024535
A0A1L2JY41
1 451
Architecture
STR
STR 1-446 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
A0A1L2JY41
1 451
Domain Start End Length (AA) Confidence
N-terminal 1 20 20 0,8868
Central domain 21 440 421 0,9953
C-terminal 441 451 10 0,2102
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-20
Central
21-440
C-terminal
441-451

Taxonomy

  Name Taxonomy ID Lineage
Phage Aeribacillus phage AP45
[NCBI] 		1913112 Uroviricota > Caudoviricetes > Kamchatkavirus >
Host Aeribacillus pallidus
[NCBI] 		33936 cellular organisms > Bacteria > Bacillati > Bacillota > Bacilli > Bacillales

Coding sequence (CDS)

Coding sequence (CDS)

No CDS data available.

Genome Context

Genome Context

Gene Ontology

Description Category Evidence (source)
GO:0044423 virion component Cellular Component IEA:UniProtKB-KW (UniProt)
GO:0051701 biological process involved in interaction with host Biological Process IEA:UniProtKB-ARBA (UniProt)
GO:0019058 viral life cycle Biological Process IEA:UniProtKB-ARBA (UniProt)

Tertiary structure

PDB ID
aa9eea67616f15a3b048dd052f5c78f43a08474ece1a8da52ca829d6dfe51e25
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,8914
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50