Protein

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Genbank accession
YP_001468658.1 [GenBank]
Protein name
baseplate upper protein
RBP type
TF
Evidence Phold
Probability 1,00
TF
Evidence RBPdetect
Probability 0,90
TF
Evidence RBPdetect2
Probability 0,85
Protein sequence
MTIKKIGTTKLETSAYYQPIGNTGIKFWNMDSNTSILQFQITRNNIVLPLGLNNVIAYITLIASDGSHLTDTLEIIDELKGILSYQIPNDFLMHTGTVQGQVYISVNNTEETVTEAEFIFEIEDALINKITSDIKIKYIRIFDDLKKDIEKKIKKIIADIDSGDDYVTAIQNVSIDATTKINAKYDDLQTRFDNLNPSQLAKKTGDTFTGSLQFDGVPTIFQAKQSNAWWYRLTSENSTTCQQSLFPTIVSGINGIQGAGYNFKQAYLKLNNVDVETVTGAQAKADQALADAKADSQAKANQALIDANIYTDNSSKEKLVWSGSSYFLDTHTFSWDAAKVKHGVLLEFSRYDPGTGVLDYGYIQYFFSKEYLVRNNNKATWLNMPGATDGAKKTVRLTPTSVSGDATNGQAPSTSYALRTVAIF
Physico‐chemical
properties
protein length:424 AA
molecular weight: 47005,25960 Da
isoelectric point:5,28497
aromaticity:0,10142
hydropathy:-0,28184

Domains

Domains [InterPro]
DC_0885
STR
1–384
DC_0885
G3DSA:2.60.40.3350
ATT
8–129
G3DSA:2.60.40.3350
IPR018913
ATT
10–150
IPR018913
YP_001468658.1
1 424
Architecture
ATT
STR
ATT 1-150 | STR 151-384 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Taxonomy

  Name Taxonomy ID Lineage
Phage Listeria phage B025
[NCBI] 		330396 Uroviricota > Caudoviricetes > Trabyvirinae > Jelitavirus B025 >
Host Listeria monocytogenes
[NCBI] 		1639 cellular organisms > Bacteria > Bacillati > Bacillota > Bacilli > Bacillales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_001468658.1 [NCBI]
Genbank nucleotide accession
NC_009812 [NCBI]
CDS location
range 17417 -> 18691
strand +
CDS
ATGACAATAAAAAAGATTGGTACAACTAAACTTGAGACTAGCGCATATTATCAACCTATTGGAAATACTGGCATTAAGTTTTGGAATATGGATTCTAATACCTCAATTCTTCAATTTCAAATAACAAGAAATAATATTGTTTTACCTTTAGGCTTAAACAACGTCATTGCTTATATTACTCTAATAGCAAGCGATGGAAGTCATTTAACTGATACATTAGAAATCATTGATGAATTGAAAGGTATTTTATCATATCAAATTCCCAATGATTTTTTAATGCACACAGGAACAGTTCAGGGGCAGGTTTATATTAGTGTGAATAACACAGAAGAGACAGTAACGGAAGCTGAGTTTATTTTTGAGATTGAAGATGCATTAATCAACAAGATAACAAGTGATATAAAAATAAAATATATTCGTATTTTTGATGATTTAAAAAAAGATATTGAAAAAAAAATAAAAAAAATCATTGCTGATATTGACTCAGGAGATGATTATGTAACAGCTATACAAAACGTGTCTATTGATGCCACCACAAAAATAAATGCGAAGTATGACGACTTACAAACACGATTCGACAATTTAAATCCCTCGCAGCTCGCAAAAAAAACAGGTGATACTTTCACTGGATCATTGCAATTTGACGGAGTACCAACAATCTTTCAAGCGAAGCAGAGCAATGCTTGGTGGTATCGTCTAACATCAGAAAATAGCACAACTTGTCAGCAATCTTTGTTTCCAACAATTGTTTCAGGTATAAACGGCATTCAAGGAGCTGGTTATAACTTTAAACAGGCATACTTGAAGTTAAATAACGTCGATGTAGAAACAGTTACAGGTGCGCAAGCGAAAGCGGATCAAGCACTTGCTGATGCAAAAGCAGATTCACAAGCAAAAGCAAATCAAGCTTTAATAGATGCGAACATCTATACAGACAACTCGAGTAAAGAAAAGCTCGTATGGTCTGGTTCGTCCTACTTTCTTGATACGCATACCTTCAGCTGGGACGCCGCAAAAGTAAAACACGGTGTGTTACTAGAATTCTCACGTTACGACCCTGGGACTGGCGTTTTAGATTATGGTTATATACAGTATTTCTTCTCAAAAGAATATCTAGTAAGAAACAACAATAAAGCGACGTGGTTAAACATGCCTGGCGCTACAGATGGAGCGAAAAAAACGGTTAGGCTAACACCAACAAGCGTCAGTGGAGATGCAACAAATGGTCAAGCACCAAGCACGAGTTACGCATTAAGAACAGTAGCAATTTTTTAG

Genome Context

Genome Context

Tertiary structure

PDB ID
de0b2c433c324694701712ba5f77e3c9b2d5ee4620594cb39f39456b3c96c1f0
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,8044
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Bacteriophages of Listeria monocytogenes Dorscht,J., Zimmer,M. and Loessner,M.J. 2009-12 — GenBank