Protein

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Genbank accession
YP_009818296.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence GenBank
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,91
TSP
Evidence RBPdetect2
Probability 0,95
Protein sequence
MANSTLTKFPSGRVQYKINFPYLARAFVVVTLVVSTDPTKDKVLVVGNDYRFLNETTLEILADQTGFDIIQIHRFTSTELVVDFRDGSVLTASDLSTAEIQAIHIAEEGRDQSINLASGYTEEAKKYADEASDALEGIKDIVQDGNFDTTLRQDLRSDTGLSMIHRKLPDIGAVNVGMDALFGNMLNPVDFGADPTGSVDSYAALQKWADACTSRPWAYAFISGIFKVSQPVTFRNIRGMTIYGHCYIYPTFDQGDYVVGFCNGAGLRIHGRFEVSGQNKVSIKTGVKIWSDMNPNGFSFSYFYGMCVSDANPGITLGDTRYANALLSELSFIGGYTVGTPCSIKAIGTQCYFNVIGFDAVTGGAGDLAQVTPYTYHLKGAQMKVIGGEIQHNDSIVGAAILLEPIVDPVHGNTYGNVTVDQSHFEVASTWVMVANLDGVPNPISHRSSVTLIGLHGYHNQDNGPVVLVHESADDYRGTIVTRDISMYRGDDSPDRVNMNIQARNAYVDYDRKGFGKGFVRGLQAVQGGVLKFEKSTICIAQNSVGQTHTTAPNNVLYTQFIANGDTDRWSSNYNPATGEFTVPAGGLKDVHVEATVEVASSSQVTMAVYVDNDRKNLVQTLPVAGNTSAYLGHLPAGAKISVKCQLGTGSGASTGAGLDRMVITASNY
Physico‐chemical
properties
protein length:669 AA
molecular weight: 72201,14230 Da
isoelectric point:5,31651
aromaticity:0,09268
hydropathy:-0,10762

Domains

Domains [InterPro]
DC_0657
STR
1–666
DC_0657
IPR005604
ATT
14–113
IPR005604 IPR012334
YP_009818296.1
1 669
Architecture
STR
ATT
STR
STR 1-13 | ATT 14-113 | STR 114-666 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_009818296.1
1 669
Domain Start End Length (AA) Confidence
N-terminal 1 201 201 0,9941
Central domain 202 533 333 0,9888
C-terminal 534 669 135 0,9920
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-201
Central
202-533
C-terminal
534-669

Taxonomy

  Name Taxonomy ID Lineage
Phage Escherichia phage Ro45lw
[NCBI] 		2498616 Uroviricota > Caudoviricetes > Autographivirales > Studiervirinae > Kayfunavirus
Host Escherichia coli
[NCBI] 		562 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_009818296.1 [NCBI]
Genbank nucleotide accession
NC_048136.1 [NCBI]
CDS location
range 33637 -> 35646
strand +
CDS
ATGGCTAACTCTACGCTGACTAAGTTCCCGTCTGGTCGGGTTCAATATAAGATTAACTTCCCGTACCTAGCCCGTGCGTTCGTTGTGGTCACGCTTGTGGTCTCTACGGACCCGACGAAAGACAAGGTGCTGGTCGTAGGGAATGACTATCGGTTCCTCAACGAGACAACCCTTGAGATTCTGGCAGACCAGACCGGATTCGATATCATCCAGATTCACCGATTCACTTCGACAGAGCTGGTGGTAGACTTCCGTGATGGCTCGGTGCTGACTGCAAGCGACCTGTCCACAGCGGAGATTCAGGCCATCCATATTGCCGAAGAGGGTCGTGACCAGTCCATCAACCTAGCGTCCGGCTACACTGAGGAGGCCAAGAAGTACGCCGATGAAGCCAGTGATGCTCTGGAAGGCATTAAGGACATCGTTCAGGATGGGAACTTTGATACTACCTTGCGTCAGGACCTTCGTAGCGATACAGGCCTTTCCATGATTCACCGCAAGCTGCCGGACATTGGGGCTGTTAACGTTGGGATGGACGCCCTGTTCGGCAATATGCTCAACCCAGTAGACTTCGGGGCGGACCCGACTGGCAGTGTTGACTCTTACGCAGCTCTCCAGAAGTGGGCCGATGCATGTACTTCGCGTCCTTGGGCCTATGCGTTCATCTCAGGCATCTTCAAGGTCAGCCAGCCAGTTACCTTCAGGAACATTAGAGGCATGACAATTTACGGACATTGCTACATCTACCCAACCTTTGACCAAGGGGACTACGTTGTGGGATTCTGCAACGGAGCAGGGCTACGTATTCACGGTCGGTTCGAGGTGTCTGGACAGAACAAGGTTAGCATTAAGACTGGTGTTAAGATTTGGTCGGACATGAATCCTAACGGTTTCTCCTTCAGTTACTTCTATGGAATGTGTGTGTCCGATGCTAATCCGGGTATTACCCTTGGTGATACTCGATATGCTAACGCACTTCTCTCTGAGCTGTCCTTCATTGGTGGATATACCGTAGGAACCCCATGCTCAATTAAAGCTATCGGCACTCAATGCTACTTCAACGTGATTGGATTCGATGCGGTGACTGGGGGTGCTGGCGATTTAGCACAGGTAACGCCGTATACCTACCACCTTAAGGGTGCTCAGATGAAAGTCATTGGCGGAGAGATTCAGCATAATGATTCAATCGTGGGTGCTGCAATACTGTTGGAGCCTATCGTCGACCCTGTGCATGGCAACACCTATGGTAACGTTACAGTGGATCAGAGCCACTTTGAGGTTGCTAGTACGTGGGTTATGGTGGCAAACCTTGACGGAGTTCCTAACCCAATCAGCCACCGTTCGTCTGTGACGTTAATCGGACTTCACGGTTACCACAATCAGGATAATGGACCTGTGGTCTTGGTCCATGAGTCAGCTGATGATTATCGTGGCACAATCGTGACCCGTGACATCTCAATGTACCGTGGAGACGATTCACCGGACCGTGTGAACATGAACATTCAGGCCCGCAACGCTTACGTCGATTATGACCGCAAGGGATTCGGTAAAGGCTTCGTGAGAGGACTTCAGGCTGTTCAGGGTGGAGTACTTAAGTTCGAGAAGTCCACTATATGCATCGCTCAGAACTCAGTAGGTCAGACTCATACGACTGCACCTAACAACGTTCTGTACACCCAGTTCATCGCCAATGGGGACACTGACCGCTGGTCTTCCAACTACAATCCTGCGACTGGTGAGTTTACTGTTCCGGCTGGTGGGCTAAAGGATGTTCATGTGGAGGCAACTGTGGAGGTCGCTAGTTCAAGTCAGGTGACTATGGCTGTCTACGTGGACAACGACCGTAAGAACCTCGTTCAGACCCTGCCTGTAGCTGGTAACACTTCTGCATATCTGGGTCACCTCCCAGCAGGGGCTAAGATTAGCGTTAAGTGTCAGCTAGGTACTGGCTCAGGTGCATCTACTGGCGCAGGTCTTGACCGAATGGTCATCACCGCTTCAAACTATTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
89b4d93cfedf8a1451c67f5e9de3995ba32bfa82167310e0d3e6521d3f42a751
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7897
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Complete Genome Sequence of Escherichia Phage vB_EcoP-Ro45lw Isolated from the composting of food scraps and yard trimmings Liao,Y.-T., Liu,F. and Wu,V.C. 2019-02-28 — GenBank