Protein

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Genbank accession
ATS92454.1 [GenBank]
Protein name
tail tubular protein B
RBP type
TSP
Evidence DepoScope
Probability 1,00
Protein sequence
MARVEGSYESVVRGVSQQVPHQRFSGQHTDQKNLLSDPVEGLVRRRGTRRISEHLVTPSLTASDIAEIQKYRTHKWNPGSAGEPLQVAYKAKPGVIGDSRLLYIINQVTRNRVNTAGIDAETDTVYQKARANGLSAITSVGRYLFMAVNNHVGSVAASQDYLATANRNKVVAWVRGGAYARTYTVTLLLDAGGQLKFSYTTMSSSYPTLIDTTAAGNTTDTDYQNKLSKIVADYNSATTKWISDAAKDIDAENIANRLLNGPATSGNTGTGTGLIAANAAATGINKVTNLTYALVSSTLYIQGDNIREIVVDDGGDTTLIRGVGNEVTSADLVSTRHFYDKIVKVRAKKSDDSDAYYLKAESKNDSNDPGVTDRGEVVWKECAGYTQTLTNHFLFGYYHTDGVVYVSSSLSKLSTALSITTPVLQPNLAGDDFTNPPPNFGTKQISYLGMFQDRLVVGSGAVASFSRPGDYLNFFRQSVLTLTDTDPIDMFALGAEDDVLRHSALFDKSLFIFGDKRQYVVNGRTVLTPTNQNMTVVSQFPNTTGAQPQGSGNFIFYTKPGDTSSPVITLNQMQYGQIADSTESYDLSQQLTDFCAGVCAEIVPVTSPAAVLVRPETSQNLYVFRYTDEVGTGRRMQAAWDRWEFDPAFGTIISMATYGDEILAMVMRRAEDGSTYLCVEQLSLRPAKSNEPYFDSYQVATGVGSGITVSSPYLLASPNLLNRCYVAVVGGSHALTGTTYEDRAELTASQIADGTLAAGIPFESSCIPTNPYQRDQNGNAILQGRLVLSQVQISVQETGAMDVYVADANREWLSKHFNGFRLSRTASMVGSQPVVDTSITALIGREVRECRYRIQSVKFLPMVVTAISWQGQSFRR
Physico‐chemical
properties
protein length:876 AA
molecular weight: 95402,65130 Da
isoelectric point:5,97016
aromaticity:0,08790
hydropathy:-0,24201

Domains

Domains [InterPro]
IPR058003
TTP
1–875
IPR058003
DC_0058
STR
1–876
DC_0058
ATS92454.1
1 876
Architecture
STR
STR 1-876
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
ATS92454.1
1 876
Domain Start End Length (AA) Confidence
N-terminal 1 205 205 0,7751
Central domain 206 420 216 0,4060
C-terminal 421 876 455 0,2615
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-205
Central
206-420
C-terminal
421-876

Taxonomy

  Name Taxonomy ID Lineage
Phage Escherichia phage PGT2
[NCBI] 		2047782 Uroviricota > Caudoviricetes > Autographivirales > Ermolevavirus > Ermolevavirus PGT2
Host Escherichia coli
[NCBI] 		562 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
ATS92454.1 [NCBI]
Genbank nucleotide accession
MG201401 [NCBI]
CDS location
range 25702 -> 28332
strand +
CDS
ATGGCGCGTGTTGAAGGTTCTTACGAATCAGTAGTTCGGGGCGTCTCTCAGCAGGTGCCACACCAACGTTTCTCAGGTCAGCACACTGACCAAAAAAACTTACTTAGTGACCCGGTAGAGGGTCTGGTACGGCGCAGAGGTACTCGCCGCATATCAGAGCATCTTGTTACCCCGTCACTGACTGCCTCCGATATTGCAGAGATTCAAAAATATCGTACACACAAGTGGAACCCCGGTTCCGCTGGCGAACCCCTACAGGTTGCATATAAGGCCAAGCCCGGTGTTATAGGGGATAGCCGTCTGCTGTACATCATCAATCAGGTTACTCGGAACCGGGTTAACACTGCTGGTATAGACGCCGAGACTGATACGGTGTATCAGAAAGCGCGCGCTAACGGTCTGTCCGCCATAACCTCTGTAGGTCGTTACCTGTTCATGGCGGTAAACAATCATGTGGGCAGCGTGGCTGCGTCTCAGGATTACTTAGCAACAGCCAACCGCAATAAGGTTGTAGCATGGGTCCGTGGTGGGGCATATGCCCGTACATATACCGTGACCCTATTGCTGGATGCTGGTGGTCAATTGAAGTTCAGCTACACCACAATGTCCTCGTCATATCCTACCTTGATTGACACCACTGCGGCTGGTAACACCACCGATACGGATTATCAGAATAAGCTGTCCAAGATAGTCGCCGATTACAACTCGGCCACTACCAAGTGGATTTCGGACGCAGCCAAGGACATCGACGCGGAGAATATTGCCAACCGCTTATTGAACGGTCCAGCCACATCCGGTAATACTGGTACTGGCACGGGTCTTATTGCAGCAAACGCTGCTGCCACTGGAATCAATAAAGTAACCAACCTGACATACGCGCTGGTTAGCTCCACGCTGTATATTCAGGGCGACAACATTCGTGAGATAGTTGTTGACGATGGTGGCGACACGACACTGATTCGTGGCGTTGGTAATGAGGTAACGAGCGCGGACTTAGTATCCACACGACACTTCTATGACAAGATTGTGAAGGTGCGTGCTAAGAAGTCGGACGACTCTGACGCATACTACCTGAAGGCAGAATCAAAGAACGATTCCAATGACCCCGGTGTAACTGACCGTGGGGAGGTGGTCTGGAAAGAGTGTGCTGGATATACTCAGACGTTGACCAACCATTTCCTGTTCGGCTACTACCACACCGATGGGGTCGTGTATGTTTCAAGCTCTCTTTCTAAGCTGTCTACTGCGCTTTCAATCACTACCCCGGTTCTCCAACCGAACCTTGCTGGGGATGATTTCACCAACCCACCACCTAACTTCGGGACCAAGCAGATTAGTTACTTGGGTATGTTCCAAGACCGTCTTGTCGTGGGTTCGGGGGCAGTTGCTTCGTTCTCGCGGCCCGGAGATTACCTTAATTTCTTCCGACAATCAGTGCTCACGCTTACTGACACTGACCCGATTGACATGTTCGCACTCGGTGCCGAGGATGATGTTCTCCGACACTCGGCGTTGTTCGATAAGTCCTTATTCATCTTTGGTGACAAGCGACAATACGTAGTCAATGGGCGTACCGTCCTGACTCCGACCAACCAGAACATGACCGTGGTATCGCAGTTCCCGAACACTACCGGGGCGCAACCACAGGGTTCCGGCAACTTCATCTTCTATACGAAGCCCGGTGACACGAGTTCTCCAGTTATTACTCTCAACCAGATGCAGTATGGGCAGATTGCAGACTCCACGGAGTCCTATGACCTGTCTCAACAGTTAACTGACTTCTGTGCTGGGGTATGTGCTGAAATCGTTCCTGTGACCTCTCCAGCGGCTGTGTTGGTTCGTCCAGAGACATCGCAGAACTTGTACGTGTTCCGGTATACCGATGAGGTGGGTACTGGTCGTCGTATGCAGGCTGCATGGGACCGCTGGGAGTTCGACCCGGCATTCGGGACAATCATCTCTATGGCGACCTACGGCGATGAGATTCTGGCTATGGTTATGCGTAGGGCCGAGGATGGTTCGACGTACCTGTGCGTTGAGCAGTTATCGTTACGACCTGCAAAAAGCAACGAACCATATTTCGACTCATATCAGGTGGCCACTGGTGTAGGTTCCGGGATTACCGTATCCTCTCCGTACCTGTTAGCAAGTCCGAACTTACTTAATCGCTGTTATGTTGCGGTTGTTGGTGGTAGCCATGCTTTGACCGGGACCACGTATGAGGATCGTGCAGAACTGACAGCCTCTCAAATTGCCGATGGGACTTTGGCGGCGGGTATCCCGTTCGAATCTTCCTGCATCCCAACCAACCCTTATCAGCGCGACCAGAATGGGAACGCTATTCTACAGGGTAGGCTGGTGCTGTCTCAGGTTCAAATATCCGTGCAGGAGACTGGGGCTATGGACGTATACGTGGCTGACGCTAACCGTGAGTGGTTATCGAAACACTTCAACGGGTTCCGCCTGTCTCGTACCGCATCTATGGTTGGTAGTCAACCTGTCGTGGACACCTCTATAACAGCATTGATTGGCCGAGAGGTCCGTGAATGCCGTTATCGCATTCAATCCGTTAAATTCCTGCCCATGGTGGTAACAGCCATCTCGTGGCAGGGTCAATCATTTAGGAGATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
325c4dc9b061ef0f38ddc274b96de3b972390c277e49a83d91f0f387232e3c43
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,8415
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Complete genome sequence of Escherichia coli bacteriophage PGT2 Kulikov,E.E., Golomidova,A.K., Kudryavtseva,A.V. and Letarov,A.V. 2018 29348330 GenBank