Protein

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Genbank accession
UZV39863.1 [GenBank]
Protein name
tail fiber
RBP type
TF
Evidence GenBank
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,91
Protein sequence
MSRLPDHSSRIICSDAHHPYPFKIEVAPGSLSFGNIVMNQSSIARQLVVTNVGSHPVRIGEIKTSGAFRATSNAPAYLNPGQNFLIDVFFLPRNEGISTGGVYVDTNDAHGTEYASLIGYGYVAGTDPGGGEGGTGGGVLPKYWAFIGDGETTSFPLDGADAYEKLLYDTYAEITPDAKDYVGINPVDFTIDPPSGGSVATIRFNVPLADGVNGYTILRGYAKPYTGPPPIDTVAPGVDTTIIENNTIIDRTKQNSILVVNSSTPITIKIRNQSGDDAKDWKNGEFFSVLQRGLGPVTLVMENPTGGELYPALDFIPRTRGVNCVISATCFNQDANQWVVTGDMLRGTSGSERHTFELLNQSVLNTSNMPIGTNKDGFVMPYGLTLDPIVDNGLLASLMVPQASGNIFTVDILRNGNTILANKLLINNGENSSINAVTPAAYIENGNVLEAGDLITLSITQVGNGSARGLRVFLTGSRS
Physico‐chemical
properties
protein length:479 AA
molecular weight: 50917,50650 Da
isoelectric point:4,81707
aromaticity:0,07933
hydropathy:-0,09624

Domains

Domains [InterPro]
IPR013783
STR
23–122
IPR013783 DC_0220 DC_2071
IPR013783
STR
25–115
IPR013783
UZV39863.1
1 479
Architecture
STR
STR
RBD
STR 23-122 | STR 177-346 | RBD 350-479
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
UZV39863.1
1 479
Domain Start End Length (AA) Confidence
N-terminal 1 62 62 0,9880
Central domain 63 262 201 0,0249
C-terminal 263 479 216 0,7124
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-62
Central
63-262
C-terminal
263-479

Taxonomy

  Name Taxonomy ID Lineage
Phage Xanthomonas virus PB119
[NCBI] 		2995629 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Xanthomonas euvesicatoria
[NCBI] 		456327 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Lysobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
UZV39863.1 [NCBI]
Genbank nucleotide accession
OP562166.1 [NCBI]
CDS location
range 69549 -> 70988
strand -
CDS
ATGTCCCGGTTGCCTGATCACTCCAGCCGCATCATCTGCTCGGATGCACACCACCCGTATCCGTTCAAGATCGAGGTGGCACCGGGCAGCCTGTCGTTCGGCAACATCGTGATGAACCAGAGTTCGATTGCACGTCAGTTGGTTGTCACCAACGTCGGCAGTCATCCTGTTCGCATCGGTGAGATCAAGACGTCTGGTGCCTTCCGTGCAACCAGCAATGCGCCTGCGTATCTGAATCCCGGTCAGAACTTCTTGATCGATGTCTTCTTCCTGCCCCGGAATGAGGGCATCTCGACCGGCGGCGTGTACGTTGATACCAACGATGCACACGGTACCGAGTACGCCTCTCTGATCGGCTACGGCTACGTGGCTGGCACTGATCCGGGCGGTGGCGAAGGTGGTACTGGTGGTGGTGTCCTGCCGAAGTATTGGGCCTTCATCGGTGACGGTGAAACGACCAGCTTCCCGCTGGATGGTGCAGACGCTTACGAGAAGCTGCTGTACGACACCTATGCGGAGATCACCCCGGATGCCAAGGATTACGTGGGCATCAATCCGGTGGACTTCACCATTGATCCACCATCTGGTGGCAGCGTTGCGACGATCCGTTTCAATGTGCCTCTGGCTGATGGCGTCAATGGCTACACGATCCTGCGTGGCTACGCCAAGCCGTACACTGGCCCACCGCCGATTGATACCGTGGCTCCGGGTGTGGATACCACGATCATCGAGAACAACACGATCATTGACCGCACGAAGCAGAATTCCATTCTGGTTGTCAATTCCAGTACCCCGATCACCATCAAGATCCGGAACCAATCGGGTGATGATGCGAAGGACTGGAAGAATGGTGAGTTCTTCTCTGTGCTTCAGCGTGGTCTCGGCCCGGTGACTCTCGTCATGGAAAATCCGACCGGTGGTGAGCTGTATCCGGCTCTCGACTTCATTCCACGTACCCGTGGTGTGAACTGTGTGATCTCGGCTACCTGCTTCAATCAGGATGCGAACCAATGGGTCGTGACTGGCGACATGTTGCGTGGTACCAGTGGCAGTGAACGCCACACGTTTGAGCTGCTCAATCAGAGTGTGCTCAACACGAGCAACATGCCGATTGGTACCAACAAGGATGGATTCGTCATGCCGTATGGTCTGACGCTTGATCCGATTGTGGACAACGGACTGCTCGCATCGCTCATGGTTCCACAGGCTTCTGGCAACATCTTCACTGTGGACATCCTGCGGAATGGCAACACGATCTTGGCGAACAAGCTGCTGATCAACAATGGGGAGAACTCTTCGATCAATGCGGTGACTCCGGCTGCCTACATCGAGAACGGCAACGTTCTTGAAGCTGGTGATCTGATCACGCTCTCGATCACGCAAGTCGGCAACGGTTCTGCCCGTGGCCTGCGTGTCTTCCTCACTGGTTCGCGGAGCTGA

Genome Context

Genome Context

Tertiary structure

PDB ID
afb6a9471ca557ac8e839c8eb93af56697330be4de7bb7d5e6e710ba0873d87c
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7539
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Characterization of novel bacteriophages useful for control of diseases caused by X. euvesicatoria Petrzik,K. and Brazdova,S. 2015-04-10 — GenBank