Protein

View in Explore
Genbank accession
XHY53200.1 [GenBank]
Protein name
long tail fiber protein distal subunit
RBP type
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,83
Protein sequence
MADLSRIQFKRTSTKGRRPDAGTMNPGELAINLADQYLLTKNDSGAIINLSCPPVYDRQVRFAGKVDGDNYILGKTANYMDDSTARDLDKFGAFRTNNADGWSNLILNIPHSNGKAHGRGFEFQYGSSSSQVKTYGFDKDGNKRFSYRMYHEGDKPTPGELNVYSKQEVDRMFVKNVKLATVPVDTVEGYFKLATAMIPQNGRSVFFRIHGGNGYNVTAYDQVDIVEIVIRSGNNRPKGVNVIAYRRNTNKSFDVLAVNTSGDNYDIYVKYQRYTDNVIVEFGKSVDVNLTVHDVPDFVAERPAGDNVIGGRAVTLFNTENKRGVLSFDDNTQNSYDIVHLSNDRGTGRKYIRKFRSNYNEMVWHETVQGAVYRLATGVTDSTEVLRVDSNSAIPGSYKGYVITGKMELHGSGNAMTLHRQTDQAAYMAWWDRRDGKNQRSGYIGHADGTSDGFVWRNDVGANSFDLEGSGQVNLTTGKTKIVYTNGQYYSANSDAYRMIFGNYGAFWRNDGTKIYLLSTEENDRFGGWNGNRPFIYDLTNGKVTLGGDGNEGALVLERDSRAARFSNNVFLEKGLLTFSAGGNQSMDSFTINHWGNSNAGRYNVLQFEDTKGTHFTTERNADGGLLAHFRGDLTTEGKLTWGKGTATSGFNIRAWGNSGSRKQVFECVDESGWHWYTQRPGGPGTSAIEFAINGTVKPQAIHTGGNILLNGADIEFRRTGNKHIWFRDPDGLELGLMYSDDAGVIRFRGQKQAQTWKFADKMIQLEAGTVTGGGNGLIRGEVAGGSWASWRDRAAGLMVGCPQSVDSAHNVWKATHWGKYHIAAMGVHVPSGTITNALARLNVHDANFDFNASGDMSVGRNGSFNDVYIRSDARLKINKEEYKENATDKVNRLTVYTYDKVKSLTDRTVIAHEVGIIAQDLEKELPEAVTTSKVGDPDKPEEILTISNSAVNALLIKAFQEMSEELKAVKAELAELKKN
Physico‐chemical
properties
protein length:980 AA
molecular weight: 108515,32620 Da
isoelectric point:7,69938
aromaticity:0,10204
hydropathy:-0,56082

Domains

Domains [InterPro]
DC_0932
STR
30–570
DC_0932 IPR030392 Coil
IPR048390
ATT
454–535
IPR048390 IPR030392
DC_0000
STR
500–980
DC_0000
XHY53200.1
1 980
Architecture
STR
ATT
STR
STR 30-453 | ATT 454-535 | STR 536-980
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
XHY53200.1
1 980
Domain Start End Length (AA) Confidence
N-terminal 1 252 252 0,1814
Central domain 253 451 200 0,4865
C-terminal 452 980 528 0,6894
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-252
Central
253-451
C-terminal
452-980

Taxonomy

  Name Taxonomy ID Lineage
Phage Shigella phage SSG23
[NCBI] 		3350104 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Shigella sonnei
[NCBI] 		624 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
XHY53200.1 [NCBI]
Genbank nucleotide accession
PQ351811 [NCBI]
CDS location
range 134761 -> 137703
strand -
CDS
ATGGCAGATTTAAGCAGAATCCAATTTAAACGCACTAGCACTAAAGGTCGTCGACCTGATGCTGGTACGATGAATCCGGGGGAATTGGCAATCAACCTTGCGGATCAATATCTTCTTACTAAAAATGATTCCGGTGCTATTATCAATTTAAGTTGTCCTCCGGTTTATGACCGACAAGTTAGATTCGCTGGTAAGGTTGACGGCGACAACTATATTTTAGGTAAAACCGCTAACTATATGGACGATTCAACCGCTCGCGACCTTGACAAATTTGGTGCGTTTCGAACGAATAATGCTGATGGTTGGTCTAACTTGATTCTGAACATTCCTCATTCTAACGGTAAAGCACACGGTCGCGGGTTTGAATTTCAATATGGTTCTAGTTCCTCTCAGGTTAAAACCTATGGTTTTGATAAGGATGGCAACAAGAGATTCAGTTACCGCATGTATCACGAAGGTGATAAGCCAACTCCAGGAGAATTGAACGTTTATAGCAAACAAGAAGTAGATAGAATGTTTGTTAAGAACGTTAAACTTGCTACAGTTCCTGTTGATACCGTTGAAGGCTATTTTAAATTAGCAACTGCAATGATTCCACAAAATGGGCGTAGCGTATTTTTCCGTATTCATGGCGGCAACGGATATAACGTTACTGCATACGATCAAGTTGATATTGTAGAAATTGTTATTCGTAGTGGAAATAATCGCCCTAAAGGTGTTAACGTTATTGCATATCGCCGAAATACAAACAAATCATTTGATGTTTTGGCTGTTAACACTTCTGGCGATAACTATGATATCTATGTGAAATATCAGCGTTATACTGATAACGTTATTGTTGAATTTGGTAAAAGTGTTGATGTTAATTTAACAGTGCATGACGTTCCAGATTTTGTTGCTGAACGTCCTGCTGGCGATAATGTTATTGGCGGTCGCGCTGTAACTCTTTTCAACACCGAAAACAAACGAGGTGTGTTGAGTTTTGACGACAACACACAAAATAGCTATGATATTGTTCACTTGAGTAATGATAGAGGTACTGGTAGGAAATATATTCGTAAATTCCGTAGTAACTATAATGAAATGGTTTGGCATGAAACCGTTCAGGGTGCTGTATATCGTCTTGCTACTGGTGTTACAGATTCTACGGAAGTTCTTAGAGTTGATTCTAATAGTGCTATACCTGGTAGCTATAAAGGATATGTAATTACTGGTAAAATGGAATTGCACGGTAGTGGTAATGCGATGACTTTACATCGCCAGACTGATCAAGCTGCCTATATGGCGTGGTGGGATCGTCGTGATGGTAAAAACCAACGTAGTGGTTATATCGGTCATGCGGATGGTACTAGTGATGGTTTTGTGTGGCGTAATGATGTTGGTGCTAACTCATTTGATTTGGAAGGTAGTGGACAAGTAAATTTGACTACAGGAAAAACAAAAATTGTATATACCAACGGACAATACTATTCCGCTAACTCAGATGCATATCGCATGATCTTTGGTAATTACGGTGCATTCTGGCGTAATGACGGTACGAAAATTTATCTTCTTTCCACAGAAGAAAATGACCGTTTTGGTGGATGGAACGGCAACCGACCATTCATCTACGATTTGACAAATGGTAAAGTTACTTTAGGTGGTGATGGTAACGAAGGCGCATTAGTTCTCGAAAGAGATAGCCGTGCTGCTCGTTTTAGCAACAATGTATTCTTAGAAAAAGGATTGCTTACTTTCTCTGCGGGTGGGAATCAGTCGATGGATTCTTTCACTATTAACCATTGGGGGAATAGTAACGCTGGACGATATAATGTTTTACAATTTGAAGACACGAAAGGAACACATTTTACAACCGAACGTAATGCTGATGGTGGATTGCTTGCTCACTTCCGAGGGGATTTAACCACAGAAGGGAAATTAACGTGGGGCAAGGGTACAGCCACATCTGGCTTTAACATTCGTGCATGGGGTAATAGTGGTTCCCGTAAACAGGTTTTCGAGTGTGTAGATGAAAGTGGTTGGCATTGGTATACTCAACGGCCTGGCGGTCCGGGTACTTCTGCAATTGAGTTTGCCATCAACGGTACTGTTAAGCCTCAAGCAATTCACACTGGCGGCAATATTCTTTTGAACGGTGCTGATATTGAATTTCGTCGCACTGGTAATAAGCATATCTGGTTTAGAGATCCAGACGGTTTAGAACTAGGTTTGATGTATTCCGATGATGCTGGTGTTATTCGCTTCCGTGGTCAGAAACAAGCCCAGACGTGGAAATTTGCAGATAAAATGATCCAATTGGAAGCTGGTACTGTAACTGGTGGCGGTAATGGCCTGATTCGTGGTGAAGTTGCTGGCGGTAGTTGGGCTAGCTGGCGTGACCGTGCTGCTGGCCTTATGGTTGGGTGTCCTCAATCCGTTGACTCGGCACATAACGTATGGAAAGCGACGCATTGGGGTAAATATCATATCGCAGCAATGGGTGTACATGTTCCTAGTGGTACTATTACCAATGCTTTAGCTCGCCTAAACGTTCATGACGCCAACTTTGACTTTAACGCCTCCGGTGATATGTCGGTAGGTCGTAACGGTTCGTTTAACGATGTGTATATTCGTTCTGATGCTCGCCTTAAAATCAACAAGGAAGAGTATAAAGAGAATGCCACCGATAAAGTTAATCGCTTGACTGTATACACCTACGATAAGGTTAAATCTTTAACTGACCGTACTGTCATTGCTCATGAAGTTGGTATTATTGCACAGGATCTTGAAAAAGAATTGCCGGAAGCCGTAACAACTTCTAAGGTCGGCGATCCAGATAAACCAGAAGAGATATTAACAATTTCTAACTCTGCTGTCAACGCTCTTTTAATTAAGGCGTTTCAGGAAATGAGCGAAGAATTGAAAGCCGTTAAAGCTGAACTAGCGGAACTTAAAAAGAATTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
f4e381c086fc400e532eebe561827cc926e778a2fe7d76d423dd4d4d4c2aaeed
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,3046
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50