Protein

View in Explore
Genbank accession
XOD48655.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence Phold
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
TF
Evidence RBPdetect
Probability 0,90
TF
Evidence RBPdetect2
Probability 0,93
Protein sequence
MAIKLSNNAVSHLAAELAQGDTQIILTPGEGSMFPTLGAGDYFQATLAKASGQYEIVRATARDIDTLTVLRGQENTQALHFAAGDRIELRVTAGVLNALADAVRQIRPKPGDIKMWSGAVANIAAVHGSGWQLADGTNGTIDLRDRFIVGAGASYAPGNTGGANTVAISAEQMPQHNHGVNDPGHNHGVNDPTHAHSVYDPGHSHGHNTAALTPSSTGGGAFQINGYAGGTINASATGIGIYGAATGISIQGAGTGISTQNSGSGAAHENRPPYFALAFIQYTGAGVIEI
Physico‐chemical
properties
protein length:290 AA
molecular weight: 29553,27080 Da
isoelectric point:5,95612
aromaticity:0,05862
hydropathy:-0,12793

Domains

Domains [InterPro]
DC_0891
STR
1–289
DC_0891
cd22641
STR
89–187
cd22641
SSF88874
STR
109–280
SSF88874
XOD48655.1
1 290
Architecture
STR
STR 1-289 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
XOD48655.1
1 290
Domain Start End Length (AA) Confidence
N-terminal 1 272 272 0,5337
Central domain 273 279 8 0,0014
C-terminal 280 290 10 0,9972
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-272
Central
273-279
C-terminal
280-290

Taxonomy

  Name Taxonomy ID Lineage
Phage Ralstonia phage YL4
[NCBI] 		3390404 No lineage information
Host Ralstonia pseudosolanacearum
[NCBI] 		1310165 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Betaproteobacteria > Burkholderiales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
XOD48655.1 [NCBI]
Genbank nucleotide accession
PQ295879.1 [NCBI]
CDS location
range 55659 -> 56531
strand +
CDS
ATGGCTATCAAGCTGTCCAACAATGCAGTGTCCCATCTTGCCGCCGAGCTGGCGCAGGGCGACACCCAAATCATCCTGACGCCGGGCGAGGGCAGCATGTTCCCGACACTCGGCGCCGGAGACTACTTCCAGGCCACGCTCGCGAAAGCATCCGGCCAATACGAGATCGTGCGCGCCACTGCGCGCGACATCGACACGCTGACCGTGCTGCGAGGGCAGGAGAACACCCAGGCGCTGCACTTCGCAGCCGGCGATCGTATCGAGCTGCGCGTCACGGCGGGGGTGTTGAATGCGCTCGCCGACGCGGTGCGCCAGATTCGTCCCAAGCCGGGAGACATCAAGATGTGGAGCGGCGCGGTCGCCAACATCGCTGCCGTGCATGGGTCTGGATGGCAGCTTGCCGATGGGACGAATGGGACCATTGACCTACGGGACCGGTTCATCGTCGGGGCGGGTGCATCCTATGCGCCTGGGAACACCGGAGGAGCCAACACCGTCGCGATTTCCGCAGAGCAGATGCCGCAGCATAATCACGGGGTCAATGACCCCGGCCACAATCACGGCGTCAACGATCCGACGCACGCGCATAGCGTCTACGACCCTGGACACTCGCACGGCCACAACACGGCGGCGCTGACTCCATCGAGCACGGGCGGCGGCGCGTTCCAGATCAACGGCTATGCCGGCGGCACGATCAACGCTTCCGCCACGGGGATCGGCATCTACGGGGCTGCTACGGGCATCAGCATTCAGGGCGCGGGGACTGGCATCAGCACGCAAAATTCCGGCAGCGGCGCCGCACACGAGAACCGACCGCCGTATTTCGCGCTGGCGTTCATCCAGTACACTGGCGCTGGTGTGATTGAAATCTAG

Genome Context

Genome Context

Tertiary structure

PDB ID
ac2fa2fb963f0bc0fe0174b448415a0b0f5228aa9f34b6721bcd48a5ff67d883
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,8216
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Development of a Virulent Phage Cocktail Formula and Evaluation for Control of Tobacco Bacterial Wilt Disease He,H. 2025-03-13 — GenBank