Protein

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Genbank accession
AYR04301.1 [GenBank]
Protein name
endopeptidase
RBP type
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,89
Protein sequence
MATSLFDNYKQKLTELQKEKQNAVAVITNNKDLVVYEELNSKFNLQNDKIGLEVSKLWQGVNNVEENTISKIEILDDKITLESERKAEGNPIVNGAFESENTFGWNVGGTNISITTNYTYLGKRNINYINVTPTSTSGNSSWSNRFSILPSTEYTLSGLFFTGTSTKLGIKVKFSNSIKEGNDFEKEGTFDEEINLGNWSSESDLFVPKHFTFITPSNAKSAFLEFYYYEATNYCGWTEIMLTKGKQPSSYVSKTASYSKVFQQLTPDSIINSVNKGLTEGGAISVASTILDENGFSQLNNGKLSVRLNNNGVHVYSFLNESKINGSIIALRSTATGDDVIGFVNENNSYLTISYSKDASTYNSYMVLDKFGLLNPIPITYYEEQDFYSNRVWLSKKTGNGSNFFGWTDGKGRGSSAWYTRSFYLMDSGSNDSLFTIDSDDAYFGANSVLFKRNVTINGDLNVSGNKNCIQQTKFGDVPFYANEDINSLLTETDTDNIYTTELVEGKYICRIEIDEIIQECINTMLPYNIYIDKLSWGDYKVEIREKDYFIVESDREMKFKYKLEGKRKGFEHENKENNFMQKATVQKPSQETETPSIQKREKEIIHKKPINEFWELYRCNNCN
Physico‐chemical
properties
protein length:624 AA
molecular weight: 70888,04290 Da
isoelectric point:5,06813
aromaticity:0,12179
hydropathy:-0,56234

Domains

Domains [InterPro]
DC_1054
STR
1–624
DC_1054
Coil
Unmapped
6–26
Coil G3DSA:2.60.120.260
AYR04301.1
1 624
Architecture
STR
STR 1-624
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
AYR04301.1
1 624
Domain Start End Length (AA) Confidence
N-terminal 1 134 134 0,6887
Central domain 135 334 201 0,4342
C-terminal 335 624 289 0,7800
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-134
Central
135-334
C-terminal
335-624

Taxonomy

  Name Taxonomy ID Lineage
Phage Clostridium phage CPD1
[NCBI] 		2420238 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Clostridium perfringens
[NCBI] 		1502 cellular organisms > Bacteria > Bacillati > Bacillota > Clostridia > Eubacteriales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
AYR04301.1 [NCBI]
Genbank nucleotide accession
MH999280 [NCBI]
CDS location
range 16688 -> 18562
strand +
CDS
ATGGCGACAAGTTTATTTGATAATTACAAACAAAAACTAACCGAGCTACAAAAAGAAAAACAAAATGCGGTTGCGGTTATAACTAATAATAAAGATTTAGTTGTCTATGAAGAATTGAATTCTAAATTCAATCTTCAAAACGACAAAATCGGTTTAGAAGTTTCTAAACTATGGCAAGGTGTTAACAATGTAGAGGAAAATACGATTTCAAAAATAGAAATATTAGATGATAAAATAACTTTAGAATCAGAAAGAAAAGCGGAAGGTAATCCAATAGTAAACGGTGCTTTTGAAAGTGAAAACACGTTTGGGTGGAATGTCGGAGGGACAAATATATCAATAACAACTAATTATACTTATTTAGGTAAAAGAAATATAAATTATATAAATGTTACACCGACATCAACTAGCGGTAATTCTAGTTGGAGTAATAGATTCTCTATTTTACCATCAACCGAGTATACTTTATCAGGATTATTCTTTACAGGAACATCTACAAAATTAGGAATAAAAGTTAAATTCTCCAACTCTATAAAAGAAGGTAATGACTTTGAAAAAGAAGGAACTTTTGACGAAGAAATAAACTTAGGGAATTGGAGTTCAGAAAGCGATTTATTTGTACCTAAACATTTTACATTTATTACGCCCTCTAATGCTAAAAGTGCATTTTTAGAATTTTATTACTATGAAGCTACAAATTATTGTGGTTGGACTGAAATAATGTTGACCAAAGGCAAACAACCTTCTAGTTATGTAAGTAAAACCGCTTCATATTCTAAAGTTTTTCAACAATTAACACCCGATTCAATTATAAATAGTGTAAACAAAGGTCTTACAGAAGGTGGAGCTATAAGTGTTGCGAGTACGATTTTAGATGAAAACGGATTTTCTCAATTAAATAATGGAAAATTATCTGTAAGATTAAATAACAATGGTGTGCATGTATATTCATTTTTAAACGAAAGCAAAATAAACGGTTCTATCATCGCATTAAGGTCTACTGCGACGGGCGATGATGTAATTGGTTTTGTAAATGAAAACAACTCTTATCTAACTATAAGTTATAGCAAAGACGCTTCAACTTACAACTCTTATATGGTTTTAGATAAATTTGGACTTCTTAATCCGATACCAATAACATATTATGAAGAACAAGATTTTTACAGCAACAGAGTTTGGTTATCAAAAAAAACAGGGAATGGAAGTAATTTTTTTGGTTGGACAGATGGGAAAGGAAGAGGTTCATCAGCGTGGTACACCAGAAGCTTTTATTTAATGGATTCAGGAAGTAATGATTCTTTATTTACAATAGATTCAGACGACGCTTATTTTGGAGCGAATTCGGTTTTATTTAAAAGAAATGTCACTATAAACGGCGATTTAAATGTAAGTGGCAACAAAAACTGTATTCAACAAACTAAGTTTGGAGATGTTCCATTCTATGCAAATGAGGATATAAACTCTTTATTAACTGAAACAGACACAGATAATATTTATACAACAGAGTTAGTTGAGGGGAAATATATTTGTAGAATTGAAATAGATGAAATAATTCAAGAGTGTATCAACACAATGTTACCTTATAACATTTATATAGATAAATTAAGTTGGGGAGATTATAAAGTTGAAATTAGAGAAAAGGATTATTTTATAGTTGAATCTGATAGAGAAATGAAATTTAAATATAAATTAGAAGGGAAAAGAAAAGGGTTTGAGCATGAAAATAAAGAAAATAATTTTATGCAAAAAGCTACAGTTCAAAAACCTTCTCAAGAAACTGAAACACCATCGATACAAAAAAGAGAGAAAGAAATTATCCATAAAAAGCCGATTAATGAATTTTGGGAGTTATATCGTTGCAATAATTGTAATTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
63109cd51ff0c1396812ce5fc15266528125f0d789c37b97362a8ba058e726bd
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,6259
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Complete genome sequence of Clostridium perfringens phage CPD1 Shin,D. and Ryu,S. 2022-11-17 — GenBank