Protein

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Genbank accession
XRA40060.1 [GenBank]
Protein name
tail protein
RBP type
TSP
Evidence RBPdetect
Probability 0,82
TF
Evidence RBPdetect2
Probability 0,70
Protein sequence
MKIFSVILKPLAKLLSPSVKGASSNLANSQADSPNNSLTDRNNKARPYERSYDICGTVQTIPNNLMTTYKVFNAAGKIVEYGYYDAGRGYLDIHPEGITDGDTRVSDITGTSVAVYAPYTSPNNTSTPQVMVGDPIEQGLYITVESNEVDGVVLKAPNGLGISFSYMSGYPSLSGNIGTIYDPTGGSDFSGVLVPDDTFSLVAAWTNTDVDLSGGGYQVVSVSEGTVTFIVPGGLIGRWQEIRPGSFFRGDGEASLQPDSTYEKTLTDWVSINRTEVERIVANIAAANGMYKDNGKSKTLASVTAEIQYQLLDENSTPYGPIYTAQGTVSGRTPDYNGVTIYADLPVVSRVRVRARRVTDLDFNFEGSVVDEITYVNLYGQTRDNTPHYGNRTTVHSMRKQTPRAAEVKQPQLRMIATEMVYKYLGNGVFEDTMTPNTQAVQSLIRLARDPDVGGLNLTVRNMDKLLAVQNEVEAYFGDKQAGEFCYTFDDYKTTMQDIVSTIADAIFCTPYRRGADILLDFERPRMGPEMVFTHRSKAGTSEKWTRTFNDAQVFDSLKFSYIDPKTNVKETITIPETGGLKTETYDSKGIRNYKQAFWAANRRHQKNILKKISVSFTATEEGIFALPNRAVSVVKGSRMATYDGYVTAVNGLTVELSQPVKFTSGDDHSLILKLRDGGVQSVNVVPGAHDRQVIMTSVPQEAIYTGNSALKTEFSFGNEARHNAQMILVSTVDPGDDRTVKITGFNYDKDFYKFDNVPPFGRAFSNGFDNGFN
Physico‐chemical
properties
protein length:774 AA
molecular weight: 85122,21710 Da
isoelectric point:5,40393
aromaticity:0,09819
hydropathy:-0,36563

Domains

Domains [InterPro]
DC_0118
STR
1–608
DC_0118 DC_0808
NF040662
Unmapped
274–754
NF040662
XRA40060.1
1 774
Architecture
STR
RBD
STR 1-608 | RBD 625-768 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
XRA40060.1
1 774
Domain Start End Length (AA) Confidence
N-terminal 1 139 139 0,9524
Central domain 140 338 200 0,7054
C-terminal 339 774 435 0,1518
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-139
Central
140-338
C-terminal
339-774

Taxonomy

  Name Taxonomy ID Lineage
Phage Salmonella phage PK1
[NCBI] 		3412528 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Salmonella enterica
[NCBI] 		28901 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
XRA40060.1 [NCBI]
Genbank nucleotide accession
PV360690 [NCBI]
CDS location
range 16399 -> 18723
strand -
CDS
ATGAAGATTTTTAGCGTTATCCTTAAACCGCTGGCGAAACTACTATCACCATCCGTGAAAGGGGCGTCCTCTAACCTGGCGAACTCGCAGGCGGATTCCCCGAACAACAGTCTCACCGACCGTAACAACAAGGCGCGCCCGTACGAGCGCAGTTATGACATCTGCGGGACAGTGCAAACCATCCCTAATAACCTTATGACTACTTATAAGGTGTTTAACGCCGCCGGTAAAATTGTAGAGTACGGTTATTACGACGCCGGGCGTGGCTACCTCGACATACACCCGGAAGGTATAACGGACGGGGATACCCGTGTATCGGATATAACAGGTACGTCGGTCGCTGTGTACGCACCATATACATCACCCAATAACACATCGACACCCCAGGTCATGGTCGGAGACCCCATAGAGCAAGGCCTGTATATCACCGTAGAATCTAACGAAGTAGACGGCGTGGTTCTGAAAGCACCCAACGGCCTGGGCATTTCTTTCTCTTACATGTCCGGATACCCGTCCTTATCCGGTAACATCGGCACCATATATGACCCAACAGGTGGCTCGGATTTTTCTGGGGTACTGGTGCCTGATGATACATTTTCGCTGGTGGCCGCGTGGACAAATACAGACGTTGACCTCTCCGGCGGCGGATATCAGGTAGTCAGCGTGTCCGAAGGGACCGTTACCTTTATAGTGCCCGGTGGCCTCATTGGTAGGTGGCAAGAAATAAGACCCGGTTCATTTTTCCGTGGTGATGGAGAGGCCTCGCTGCAACCAGACAGCACGTATGAGAAAACATTAACCGATTGGGTTTCAATAAACCGTACCGAGGTTGAGCGTATAGTCGCCAATATCGCCGCCGCGAACGGCATGTATAAAGACAACGGCAAATCGAAAACACTGGCGTCAGTCACCGCCGAAATACAGTATCAACTGCTCGATGAAAACAGCACTCCTTACGGACCGATATATACTGCGCAAGGAACCGTGTCTGGACGCACCCCAGACTATAACGGCGTCACTATTTACGCTGACCTGCCGGTTGTGTCGCGGGTGAGGGTTCGCGCCAGGAGGGTTACGGACCTGGACTTTAATTTCGAGGGGTCTGTAGTCGATGAGATAACGTACGTTAACTTATACGGGCAAACACGTGACAACACCCCACACTACGGCAACAGAACAACAGTACACTCGATGCGCAAGCAGACCCCACGTGCTGCGGAAGTAAAGCAACCACAGTTGCGCATGATTGCTACTGAAATGGTGTACAAATACCTCGGTAATGGTGTTTTCGAAGACACGATGACTCCCAATACACAAGCCGTGCAATCTCTTATCCGCCTGGCGCGTGACCCGGATGTTGGCGGTTTAAACCTGACAGTACGCAACATGGATAAGTTACTTGCCGTGCAGAACGAGGTCGAAGCGTATTTTGGCGACAAACAGGCCGGAGAATTTTGTTACACGTTTGATGACTATAAAACCACTATGCAGGATATCGTTAGTACTATAGCTGACGCTATCTTCTGTACTCCATACAGGCGTGGGGCGGACATCCTTCTCGATTTTGAACGCCCTCGCATGGGCCCTGAGATGGTGTTCACCCACCGAAGTAAGGCTGGTACTTCCGAAAAATGGACCAGAACCTTTAACGATGCGCAGGTGTTCGATAGTCTTAAATTCTCGTACATAGACCCTAAAACAAACGTTAAAGAAACCATAACAATACCTGAAACTGGCGGGCTTAAAACGGAGACTTATGACTCTAAGGGTATTCGCAACTATAAGCAGGCTTTCTGGGCGGCAAACCGTCGCCACCAGAAGAACATTTTAAAGAAAATTTCGGTGTCGTTTACCGCCACTGAAGAGGGTATTTTCGCCCTTCCGAATCGTGCCGTTAGTGTGGTTAAGGGCTCCAGGATGGCTACCTACGACGGCTACGTAACCGCGGTAAACGGGCTCACCGTAGAACTGTCACAACCGGTTAAGTTCACCTCGGGAGATGACCATTCTTTGATTCTCAAGTTACGCGACGGCGGAGTGCAAAGTGTTAATGTAGTCCCTGGAGCGCACGACCGGCAGGTAATTATGACGTCGGTACCGCAAGAAGCCATTTACACTGGTAATAGCGCTTTGAAAACTGAATTTTCATTCGGCAACGAAGCAAGGCATAATGCTCAGATGATTCTTGTTTCTACAGTAGACCCAGGGGATGACAGAACAGTCAAAATAACCGGGTTTAACTATGACAAGGATTTCTATAAGTTTGACAACGTGCCTCCTTTCGGTCGTGCGTTCTCCAACGGATTTGATAACGGTTTTAACTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
06b188c28082f911d12807445ceb5bef30b1ff8c21c8970aa59bd09b138c6824
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,3088
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50