Protein

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Genbank accession
YP_010748121.1 [GenBank]
Protein name
tail spike protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence GenBank
Probability 1,00
TSP
Evidence Phold
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,91
TSP
Evidence RBPdetect2
Probability 0,95
TSP
Evidence UniProt/TrEMBL
Probability 1,00
Protein sequence
MSSGCGEVMSLNDLQIAKKHQIFEAEVITGKQGGVAGGADIDYATNPVTGQTQKTLPAVLRGAGFSPASFNFTTGGTLGVNDADKAVLWSKEDGGDGNYYAWRGSLPKVIPAASTPLATGGISDSAWDAFGDITFRAEADKKFKYSVKLSDFTTLQQLADAAVDSVLIDRDYTFSNNETVNFGGKTLTIDCKAKFIGDGNLVFTQLGKGSIVVGAFMESVTTPWVIKPWTDNNEWITDPAAIVATLKQSKTDGYQPTVNDYVKFPGIESLLPPEAKDQNISSVLEIRECTGVEIHRASGLMACFLFRGCHFCKMVDADNPSGGKDGVITFENLSGDWGKGNYVIGGRTSYGSVSSAQFLRNNGGFERDGGVIGFTSYRAGESGVKTWQGTVGSTTSRNYNLQFRDSAVLYPAWDGFDLGADTDMNPEDDRPGDFPYSQYPVHMLPLNHLIDNLLVRGSLGVGFGMDGKGLYVSNITVEDCAGSGAYLLTHETVFTNIAIIDTNTKDFPANQIYISGACRVNGLRLVGVRSTSGSGMMIDAPNSTVSGITGFVDPSRINVADLMDVGLGNTMINSFNSDSAALQLRIHNLSKTLNSGSVCSHINGGPGSGSAWTEITAIAGGLPDAVSLKINRGDYRAVEIPVATTVLPDNAVRDNGSISLYLDGDNLKALVKRADGSYARLTLA
Physico‐chemical
properties
protein length:684 AA
molecular weight: 72652,47470 Da
isoelectric point:4,92023
aromaticity:0,08626
hydropathy:-0,13947

Domains

Domains [InterPro]
G3DSA:2.10.10.80
ATT
65–135
G3DSA:2.10.10.80 IPR011050
G3DSA:2.10.10.80
ATT
65–130
G3DSA:2.10.10.80 IPR012332
IPR040775
RBD
71–131
IPR040775 IPR012332
IPR015331
RBD
138–684
IPR015331
YP_010748121.1
1 684
Architecture
ATT
STR
ATT 65-135 | STR 136-684
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_010748121.1
1 684
Domain Start End Length (AA) Confidence
N-terminal 1 154 154 0,9936
Central domain 155 592 439 0,9814
C-terminal 593 684 91 0,8379
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-154
Central
155-592
C-terminal
593-684

Taxonomy

  Name Taxonomy ID Lineage
Phage Salmonella phage SLMP1
[NCBI] 		2795238 Uroviricota > Caudoviricetes > Sarkviridae > Jerseyvirus > Jerseyvirus SLMP1
Host Salmonella typhimurium
[NCBI] 		90371 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_010748121.1 [NCBI]
Genbank nucleotide accession
NC_073208.1 [NCBI]
CDS location
range 15209 -> 17263
strand -
CDS
ATGTCTAGTGGTTGCGGTGAGGTAATGTCACTTAATGATTTACAGATAGCTAAAAAACACCAGATTTTCGAAGCCGAGGTTATCACCGGTAAACAAGGCGGTGTAGCCGGCGGTGCAGATATCGACTACGCCACTAACCCGGTAACCGGGCAGACGCAGAAGACGCTTCCCGCAGTCTTACGTGGTGCTGGTTTCTCCCCGGCATCTTTTAATTTTACGACCGGGGGTACTCTCGGCGTAAACGACGCAGATAAAGCTGTTCTTTGGTCGAAAGAAGATGGTGGAGACGGTAACTACTACGCATGGCGTGGCTCCCTGCCGAAAGTTATCCCTGCGGCGTCGACACCTCTTGCGACAGGCGGCATTTCGGATTCCGCTTGGGACGCGTTCGGAGATATCACCTTCCGTGCGGAAGCGGATAAGAAATTTAAATACTCCGTTAAGCTGTCCGACTTTACTACGTTACAACAATTGGCAGACGCCGCCGTTGATAGCGTTCTTATCGACCGCGATTACACTTTCAGTAATAACGAGACCGTTAACTTCGGCGGGAAGACCCTGACCATCGACTGTAAAGCGAAGTTTATCGGTGACGGTAACCTGGTATTTACGCAATTAGGTAAAGGTTCCATCGTAGTGGGCGCTTTTATGGAAAGCGTCACGACTCCGTGGGTGATAAAACCCTGGACCGACAATAATGAGTGGATAACTGACCCCGCTGCGATTGTAGCAACACTGAAACAGTCTAAAACAGATGGATACCAGCCGACGGTAAACGATTATGTCAAGTTTCCGGGTATAGAATCACTTCTCCCACCGGAAGCTAAAGACCAAAACATCTCGTCTGTCCTTGAGATACGGGAATGCACGGGCGTTGAGATTCATCGGGCTAGCGGTCTTATGGCGTGCTTCCTGTTCCGCGGGTGCCATTTCTGTAAGATGGTAGACGCCGACAACCCGAGCGGCGGGAAGGACGGCGTAATTACCTTTGAAAACCTGAGCGGCGATTGGGGTAAGGGTAACTATGTCATTGGTGGTCGAACCAGTTATGGGTCAGTAAGCAGCGCCCAGTTTTTACGTAATAATGGTGGATTCGAACGCGACGGCGGGGTTATTGGGTTTACCTCATACCGTGCGGGGGAAAGCGGTGTTAAGACATGGCAGGGTACAGTAGGTTCTACAACTTCCCGTAACTACAACCTGCAATTCCGTGATTCCGCGGTTTTATACCCGGCATGGGACGGCTTCGATTTAGGTGCGGATACCGACATGAATCCGGAAGATGACCGCCCGGGGGATTTCCCATATTCGCAATACCCGGTACATATGCTCCCCCTAAACCATTTGATTGACAATCTACTGGTTAGGGGTTCTTTAGGGGTAGGTTTCGGCATGGATGGGAAAGGTCTATATGTTTCGAATATAACTGTAGAGGACTGTGCAGGCTCGGGTGCATATCTTCTTACGCACGAAACGGTATTCACTAATATTGCTATAATCGACACAAATACTAAGGATTTTCCAGCGAACCAGATATACATTTCCGGGGCATGCCGTGTGAACGGCCTTCGTTTGGTGGGCGTACGCTCCACTAGTGGGTCGGGAATGATGATAGACGCTCCTAACTCCACTGTGAGCGGTATAACCGGTTTCGTCGACCCTTCGAGGATTAACGTAGCCGATCTAATGGATGTAGGCCTTGGTAACACAATGATTAACAGCTTTAATAGTGATTCTGCGGCACTACAATTACGGATACATAATCTATCAAAAACCCTTAATAGTGGGTCCGTGTGCTCCCACATTAACGGTGGACCAGGTTCTGGCTCAGCATGGACCGAAATTACCGCTATTGCGGGGGGCTTGCCCGATGCCGTATCATTAAAAATAAATAGGGGTGATTATCGTGCTGTTGAGATACCGGTAGCGACGACCGTCCTACCAGACAACGCTGTCAGGGATAACGGGTCTATATCACTGTATCTGGATGGGGATAACCTTAAGGCATTGGTTAAGCGGGCGGACGGAAGTTATGCAAGATTAACTTTGGCATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
9a512c2dcd6b568d599313cfa795150fe229e62121423b322a844b97501b9263
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,6936
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Complete genome sequence of a Salmonella lytic bacteriophage SLMP1 Jiang,Y., Wang,L., Qu,M., Li,F., Tan,Z. and Yao,L. 2005-02 — GenBank