Protein

View in Explore
Genbank accession
WYV70510.1 [GenBank]
Protein name
tail fiber protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
TF
Evidence RBPdetect
Probability 0,90
TF
Evidence RBPdetect2
Probability 0,96
Protein sequence
MATTPKTVRTYALDGTKKDFTIPFEYLARKFVVVTLIGATRRELILNTEYRFTTNTTITTTKAWGPADNFDLIEIRRLTSATERLVDFADGSILRAYDLNISQVQSLHIAEEARDLTADTIGVNNDGDLDARARRIVNLADGVNDGDAVNLRQQKQWAGSALNQANRAEQQANASANSASQSASSASSAATSATLAAQYRDTTLTYRNASETFKNQAGSSQSAAAASETSASKWAANPEDQPVADSRYSSLHYSRKSAASATASANSASASAAKVPLAAAEADRAKTEADRAKTEADKLGNMNALGGTIREVNTTGKKVEINTGWEWNADVMAVDGFRSRSSSSIDFNAQLNGRLGASFTGSLSVGGATTLQNTTVAGLTVNTGAQFKNGNVQVFAANTASNSHVWFYSPDGTSRGILYADKDKTVRVQAGNVVCANFAPDGGTTLNNISAGNVTARATAYTQGGIENNGRVASYRNGVGANASMYANCHFMAQTDDGTAPAYGFHRGGSYALALWLNGNQLHMMDSSGTNREILNNTNLGSWMISVGEQGVGSYAFCRSGVTATYGVDVAGGNLTYGSTGANGGAVPGTWRSRGWAGGGSHTLFQRIA
Physico‐chemical
properties
protein length:609 AA
molecular weight: 64055,49110 Da
isoelectric point:8,25294
aromaticity:0,07553
hydropathy:-0,36897

Domains

Domains [InterPro]
IPR005604
ATT
1–131
IPR005604 Coil
DC_0044
STR
1–606
DC_0044
WYV70510.1
1 609
Architecture
ATT
STR
ATT 1-131 | STR 132-606 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
WYV70510.1
1 609
Domain Start End Length (AA) Confidence
N-terminal 1 178 178 0,9877
Central domain 179 377 200 0,6280
C-terminal 378 609 231 0,8862
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-178
Central
179-377
C-terminal
378-609

Taxonomy

  Name Taxonomy ID Lineage
Phage Dickeya phage BIM BV-99
[NCBI] 		3137290 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Dickeya dadantii
[NCBI] 		204038 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
WYV70510.1 [NCBI]
Genbank nucleotide accession
PP566124 [NCBI]
CDS location
range 34594 -> 36423
strand +
CDS
ATGGCTACTACACCAAAGACGGTGCGGACCTACGCTCTCGACGGCACCAAGAAAGACTTCACGATCCCCTTCGAGTACCTCGCTCGGAAGTTCGTTGTGGTCACCTTGATCGGTGCAACTCGACGTGAGCTGATCCTGAACACCGAGTACCGCTTCACTACCAACACGACCATCACCACGACCAAGGCATGGGGACCGGCTGACAACTTCGACCTGATCGAGATTCGCCGACTGACCTCTGCAACTGAGCGTCTGGTGGACTTCGCTGATGGTTCGATCCTTCGGGCCTACGACCTGAACATCTCGCAGGTTCAATCCCTGCACATCGCTGAGGAAGCCCGTGACCTGACCGCTGACACAATCGGCGTGAACAACGATGGTGACCTCGATGCTCGTGCCCGTAGGATCGTCAACCTCGCCGATGGCGTGAATGATGGTGATGCGGTCAACCTGCGCCAGCAGAAACAATGGGCAGGCTCTGCGTTGAACCAAGCGAACCGCGCAGAGCAGCAGGCTAATGCCTCTGCGAACTCGGCAAGTCAATCTGCAAGTTCCGCAAGTTCCGCTGCGACCTCTGCGACCTTGGCGGCTCAGTATCGGGACACAACGCTGACCTACCGGAACGCCTCTGAGACCTTCAAGAACCAAGCTGGTAGCTCTCAGTCTGCCGCTGCGGCCTCGGAGACCAGCGCATCGAAGTGGGCAGCGAACCCTGAGGATCAACCTGTAGCTGACTCTCGGTATTCGTCGCTGCACTACAGCCGTAAGTCTGCTGCAAGTGCAACCGCAAGTGCCAACTCGGCTTCCGCAAGTGCCGCCAAGGTTCCCTTAGCTGCCGCTGAGGCCGACCGTGCGAAGACTGAGGCCGACCGTGCGAAGACTGAGGCCGATAAGTTGGGCAACATGAACGCGCTCGGTGGGACGATCCGTGAAGTAAACACGACTGGCAAGAAGGTAGAGATCAACACCGGCTGGGAGTGGAATGCCGACGTAATGGCGGTAGACGGGTTCCGCTCAAGGAGTTCGTCCTCCATCGACTTCAATGCCCAGCTCAATGGGAGACTTGGTGCCTCATTCACTGGGAGCCTTTCAGTTGGAGGTGCTACCACCCTACAGAACACCACTGTAGCCGGTCTAACAGTGAACACTGGCGCCCAGTTCAAGAACGGCAACGTGCAGGTATTTGCCGCGAACACAGCGTCTAACTCCCATGTCTGGTTCTACAGCCCTGACGGTACTTCCCGTGGGATTCTCTATGCTGACAAAGACAAAACGGTACGGGTGCAGGCAGGTAATGTGGTGTGTGCGAACTTTGCCCCAGATGGCGGGACCACATTAAACAACATATCTGCTGGTAATGTTACGGCCCGTGCTACTGCATATACTCAAGGTGGGATTGAGAATAACGGGCGTGTCGCGTCCTACCGCAATGGTGTGGGCGCAAATGCTTCCATGTATGCCAACTGCCACTTCATGGCTCAGACCGACGATGGCACTGCCCCAGCCTACGGGTTCCACCGTGGTGGATCGTATGCTCTGGCTCTTTGGCTGAACGGCAATCAGTTGCACATGATGGACTCAAGTGGCACTAACCGAGAAATCCTGAACAACACGAACTTAGGCTCTTGGATGATTAGCGTAGGGGAGCAGGGTGTCGGCTCGTATGCGTTCTGCCGTTCCGGCGTGACTGCTACCTACGGCGTTGACGTTGCTGGTGGAAACCTGACCTACGGCTCGACTGGCGCGAACGGTGGCGCTGTTCCCGGAACTTGGCGTTCCCGTGGCTGGGCTGGCGGTGGTAGCCATACCCTGTTCCAGCGCATCGCTTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
f3a9cf2a8621c5612d75744d0266bc1a89868e571c8bfed1a8ba0e1df885e94c
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,6754
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
The bacteriophage DdN1 - a component of the biopreparation Multiphage-S used to control bacterial diseases tomato Pilipchuk,T.A., Maximova,A.M., Girilovich,N.I., Orlovskaya,P.I., Akhremchuk,A.E., Valentovich,L.N. and Kolomiec,E.I. 2021-12-27 — GenBank