Protein

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Genbank accession
XYM58365.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence GenBank
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,85
TF
Evidence RBPdetect2
Probability 0,95
Protein sequence
MADKNFGVRKVELTGSSGTPNITSPTNLNLNANTVAISTDVTVGGEITSNVIVSAGQSVGIGSTQPTSALDVKGTFSAENYNISGIVTAQSLDAAISRWNVTADGSEHYNFAGPGLDGTEDDPTIYLVRGQEYIFNLDGLNGQHPFEIRISDGGSAYNDGITNNSGTSGNLIWDVQQDAPRDLVYQCTAHPSMVGDIVILNSASTDVIGGIASVTNLSVSGISTFSGQIDGNNGADISGGETTLSSATVSDLTDSRVVIAGTSGALEDSANLTFDGSTLSVTGDVSATNGTFSGDVSIGGTLTYEDVTNIDSVGVITARSDVSIADKIIHTGDTNTAIRFPAADTFTVETGGSEALRVDSSQRLLVNTDSAMETFGSAALQVATAAGGTLVLGRDDTSVSEDNGLGAIYFDTKAGGSFAESAVIAAEADAAQGSGDYPSRLVFKTTADGAGSVTERLRIDSSGRLGLGTASPSAPLHIDNPGDTSITQILETGNAQVSLVLRNSTSTGNNIQLNATGNDFRVLTNASERLRIDSSGRMLLGLTSARATKASASIPSFQIEGTGDSDSRMNIGRNSNADNGPEIHLYKTRGTSLGSNTVVQDNDFLGAIGFYGADGSDLFSRGAEISAAVDGTPGSDDMPTRITFGTCPAGAASPTERLRIDSEGKTTIQGTGASNNPFEIFTLKNTETSASGQSIQINLETNRNNQQGFSKIKSVASDNSGTTILQLNSSQYRFKNQADTSTYAIINSSGQLGIGTDNPTNFGGSVKLALSDSGNSVLSIAAGTSSDSSILFADGTSGDSTYRGNIKYAHSDDSMRIHTAAEERLRIDSSGNIGLGTNSPTTGNSGGRFIHIHNTATDANRPSEIVFTNGVTGTTGGNGGTITYYQDDLYTWNYEAQDLIFGTNATERLRIDSSGKISTGGETSPDVSAGGLCLDQNAEDGAILSLKSSDINHGMTTLDETDTYFSVRKVSGDKGGARIRAYTDAAGGDPAVLVSAYINSDTDQSYVPITLLGGKKDGTGTQNIAADRRIVEFKNSDGTRIASFTGTGLAFGNDHAAANALDDYEEGAWTPDLRFGGGSTGMTYNSRIGKYVKIGRLVWVTCRVHLSNKGSNTGAAQVFGLPFNTSTESNTHLTPGSVWFTAMSIQGSPQQTTCRTDGNGSGFIEFKNLTTSNEDTFDHSDITNNGQFAFQLTYLST
Physico‐chemical
properties
protein length:1197 AA
molecular weight: 124254,56460 Da
isoelectric point:4,50048
aromaticity:0,06266
hydropathy:-0,29875

Domains

Domains [InterPro]

No domain annotations available.

Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
XYM58365.1
1 1197
Domain Start End Length (AA) Confidence
N-terminal 1 51 51 0,4693
Central domain 52 250 200 0,1138
C-terminal 251 1197 946 0,9199
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-51
Central
52-250
C-terminal
251-1197

Taxonomy

  Name Taxonomy ID Lineage
Phage Synechococcus phage Sf-CH8
[NCBI] 		3413216 Viruses >
Host No host information

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
XYM58365.1 [NCBI]
Genbank nucleotide accession
PV340853.1 [NCBI]
CDS location
range 167319 -> 170912
strand +
CDS
ATGGCAGATAAGAATTTTGGAGTAAGAAAGGTCGAACTTACTGGTTCTTCTGGTACTCCTAACATCACTAGTCCAACTAATCTAAACCTGAATGCCAATACGGTTGCAATCAGTACTGATGTAACTGTTGGTGGTGAGATTACTAGCAATGTAATCGTTTCTGCTGGTCAGTCAGTTGGTATTGGAAGTACTCAACCAACGTCAGCACTGGACGTAAAAGGTACTTTCTCTGCAGAGAATTATAATATTAGTGGTATTGTTACTGCACAAAGTCTAGATGCTGCTATCTCTAGATGGAATGTAACTGCTGATGGATCAGAACACTATAATTTTGCTGGACCAGGATTAGATGGGACTGAAGATGATCCCACGATTTATCTGGTACGAGGCCAGGAGTATATCTTCAATCTGGATGGATTAAACGGACAACATCCATTCGAGATTCGTATTAGTGATGGTGGATCAGCATATAATGATGGTATCACTAATAATTCCGGTACAAGTGGTAATTTAATCTGGGATGTTCAGCAAGATGCTCCTAGAGATTTAGTTTATCAATGTACTGCTCACCCAAGTATGGTGGGTGACATTGTTATCTTAAATAGTGCATCAACTGATGTAATTGGTGGAATTGCATCTGTCACCAATCTAAGTGTATCTGGTATTTCTACGTTCAGTGGGCAGATTGATGGAAATAATGGTGCTGACATCTCTGGTGGAGAAACAACCCTTTCTTCTGCAACTGTTAGTGATCTTACCGATAGCAGAGTTGTTATTGCAGGAACTTCTGGTGCCCTTGAGGATAGTGCCAATCTCACCTTTGATGGATCAACTCTTTCTGTTACTGGTGATGTATCTGCTACTAATGGAACCTTCAGTGGTGATGTATCAATTGGTGGTACTCTGACCTATGAAGATGTAACCAATATTGATTCTGTTGGTGTTATAACTGCAAGAAGTGATGTATCAATCGCAGATAAGATTATTCACACTGGTGATACCAACACCGCAATTAGATTTCCTGCTGCTGATACATTTACAGTAGAGACTGGTGGTAGTGAAGCACTTCGTGTTGATTCCAGTCAAAGATTACTCGTAAATACAGATAGTGCAATGGAGACATTTGGATCCGCAGCACTTCAAGTAGCAACAGCTGCTGGCGGAACACTTGTTCTTGGTAGGGATGATACTTCTGTCTCTGAAGATAATGGATTAGGTGCAATTTACTTTGACACCAAAGCTGGTGGATCTTTTGCAGAAAGTGCTGTAATCGCAGCAGAAGCGGATGCAGCACAAGGTTCAGGTGATTATCCAAGTAGATTGGTCTTTAAGACCACGGCCGATGGAGCAGGATCAGTAACAGAAAGACTTCGTATCGACAGCTCTGGGCGGTTGGGCCTTGGCACTGCCTCGCCAAGTGCTCCGCTTCATATTGACAACCCTGGAGATACTAGTATCACTCAAATTCTTGAAACAGGTAACGCACAGGTTAGCCTTGTTTTAAGAAACAGCACTTCTACGGGCAACAATATCCAACTTAATGCAACAGGCAATGACTTCCGCGTTCTTACTAATGCCTCAGAGAGGCTGCGAATCGACAGCTCTGGGCGGATGTTGCTGGGACTTACAAGTGCAAGAGCAACAAAAGCTTCTGCATCAATTCCAAGCTTTCAAATTGAAGGCACGGGCGACAGTGACTCGCGGATGAATATCGGCAGAAACAGCAATGCAGATAATGGTCCTGAAATTCATTTGTATAAAACAAGAGGGACTTCTCTCGGCAGCAATACGGTTGTTCAGGACAACGACTTTTTAGGGGCCATAGGTTTTTATGGTGCTGACGGCAGTGATTTGTTCTCTAGAGGAGCAGAAATCAGCGCTGCTGTTGATGGGACTCCTGGCAGTGATGACATGCCAACTAGGATTACATTTGGGACCTGTCCGGCGGGTGCAGCCAGCCCGACGGAGCGGCTGCGAATCGATAGCGAAGGCAAAACAACAATTCAAGGCACTGGGGCGTCAAACAATCCATTTGAAATTTTTACACTTAAAAACACTGAAACCTCTGCTTCAGGGCAGTCAATTCAAATCAACTTAGAGACAAACAGAAATAACCAGCAAGGTTTTTCAAAAATTAAAAGCGTTGCTAGCGACAACAGCGGCACCACTATTTTACAACTTAATAGTTCACAATACCGATTTAAAAACCAAGCAGATACATCAACTTACGCGATAATCAACAGCTCGGGCCAGTTGGGCATCGGGACTGACAATCCGACAAATTTTGGTGGTAGTGTAAAATTAGCATTAAGTGATAGTGGAAACTCAGTATTAAGTATTGCTGCAGGAACTAGTAGTGACAGTAGTATACTCTTTGCTGATGGAACATCTGGAGATTCTACTTATAGGGGAAATATTAAATACGCACATTCAGATGATTCAATGCGTATTCATACTGCAGCAGAAGAAAGACTTCGTATCGACAGCTCTGGCAATATAGGGCTGGGTACGAACTCGCCTACGACTGGAAATAGTGGTGGAAGATTTATCCATATCCACAACACTGCTACCGATGCAAACAGACCCTCTGAAATTGTTTTTACCAATGGGGTCACTGGAACAACGGGTGGAAACGGCGGCACAATTACTTATTACCAAGATGATCTTTACACCTGGAACTATGAAGCGCAAGATTTAATTTTTGGCACCAATGCAACCGAGCGGCTGCGAATCGACAGCTCGGGAAAAATCAGCACTGGTGGTGAAACTTCTCCAGATGTAAGTGCTGGTGGTCTTTGCTTAGATCAAAACGCTGAAGATGGAGCCATTCTTTCTCTTAAGTCATCTGATATTAATCATGGTATGACCACTCTTGATGAGACAGATACTTATTTTTCTGTTCGTAAAGTTAGTGGTGATAAGGGTGGTGCAAGAATTAGAGCTTACACTGATGCAGCAGGTGGAGATCCTGCCGTATTGGTTTCGGCATATATTAACAGTGATACCGATCAAAGTTATGTGCCAATCACTCTTTTGGGTGGCAAGAAAGATGGCACAGGAACACAAAATATTGCAGCTGACAGACGAATTGTTGAATTCAAAAACTCTGATGGAACTCGGATTGCTTCATTTACTGGAACTGGTCTAGCTTTCGGAAATGATCATGCCGCTGCAAACGCTCTCGACGATTATGAGGAAGGCGCTTGGACTCCTGACTTACGTTTTGGCGGTGGGTCTACTGGAATGACATACAATAGTCGCATTGGTAAGTATGTAAAAATAGGAAGACTTGTATGGGTTACTTGTCGAGTACATTTGTCAAACAAAGGTTCAAACACAGGTGCCGCTCAAGTTTTTGGACTTCCCTTTAATACATCCACTGAAAGTAACACCCACCTGACGCCAGGATCAGTCTGGTTTACTGCCATGAGTATTCAAGGCTCTCCTCAGCAAACAACTTGTAGGACAGATGGCAACGGGTCAGGTTTTATTGAATTTAAAAATTTAACAACATCAAATGAGGACACATTTGATCATAGCGACATAACCAATAACGGACAATTTGCCTTCCAACTTACTTATCTTTCTACCTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
6c2ea6282e021fcd0b6487e57a47a883c5aace57b566f1c3d8a317c76f87b18e
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,7586
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50