Protein

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Genbank accession
AGH07145.1 [GenBank]
Protein name
hypothetical protein
RBP type
TF
Evidence RBPdetect2
Probability 0,64
Protein sequence
MSQLNVDRIVSLGGGGGTAAIQLESSGNFNFDTGTLYVDSTNGEVGINTTTPRATLDIASTDSVIVPVGTTAQRSGAPIEGMFRYNSTDRTFEGYAFNAGANAVQWGPIAGAGGGLPDQSTDRYSPDFTEGAVLRSDGTDAYWDISGAPTGWTMSRIWTHGYVGGGYQSGSPWRNVNRTVHATDTSTNLGDTLDRSGAYMAGSFTDNRHYFHSMENTYRGSSNYTSGFSMTTEAGITHQGSWDMTVSRGSMGSFQDHEFAGGYSYLLGGGNARTDSMNLKTDVMRTSGYPQNHADGGDDPTHGGNARLKGWYKRSGTRQALVWNTESWVTWDNGPGGDGWKKILGTMLGHMYVGTGNNNQNGNQRVEDTTGLQTRGLNFGNMGEENFEMGMRKGYCLGNYNGSQNNNTFKVNYGTDAYNNLGGASPPSGHGGMSSAHCSSASAISGVNDAGTALYDYGTNIPNY
Physico‐chemical
properties
protein length:464 AA
molecular weight: 49367,79690 Da
isoelectric point:5,22904
aromaticity:0,10345
hydropathy:-0,64655

Domains

Domains [InterPro]
DC_0841
STR
1–270
DC_0841
IPR059888
RBD
46–111
IPR059888
AGH07145.1
1 464
Architecture
STR
STR 1-270 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Taxonomy

  Name Taxonomy ID Lineage
Phage Synechococcus phage S-RIM2 R1_1999
[NCBI] 		869662 Uroviricota > Caudoviricetes > Pantevenvirales > Nerrivikvirus > Nerrivikvirus srim2
Host Synechococcus sp. WH 7803
[NCBI] 		32051 Bacteria > Cyanobacteria > Oscillatoriophycideae > Chroococcales > Synechococcus >

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
AGH07145.1 [NCBI]
Genbank nucleotide accession
HQ317292 [NCBI]
CDS location
range 30831 -> 32225
strand +
CDS
ATGTCTCAATTAAATGTTGACAGAATAGTATCTTTAGGTGGAGGTGGTGGTACTGCTGCCATTCAGTTAGAATCTAGTGGTAACTTTAACTTTGATACTGGCACACTGTACGTTGACAGTACAAACGGCGAAGTTGGTATCAATACAACGACACCCAGAGCAACTCTCGACATTGCTTCTACTGATTCTGTAATCGTTCCCGTAGGTACTACTGCACAAAGATCTGGTGCTCCTATTGAGGGCATGTTCAGATATAACAGCACAGACAGAACATTTGAGGGTTATGCCTTTAATGCTGGTGCGAATGCTGTTCAGTGGGGTCCTATTGCTGGTGCTGGCGGAGGTCTTCCCGACCAATCTACCGATAGATACAGTCCAGACTTCACCGAAGGTGCGGTATTACGTTCTGATGGAACTGATGCTTACTGGGATATTTCTGGTGCGCCAACTGGTTGGACCATGAGTAGAATCTGGACGCACGGTTATGTTGGTGGTGGATACCAAAGTGGTTCACCATGGAGAAACGTAAACCGTACAGTTCACGCTACAGATACATCTACAAACCTTGGTGATACTCTGGATAGATCTGGTGCTTATATGGCAGGATCTTTTACAGATAATAGACATTATTTCCACTCGATGGAGAACACTTACAGAGGTTCTTCTAACTATACTTCTGGTTTCAGTATGACAACTGAGGCGGGTATTACGCACCAGGGATCATGGGACATGACTGTAAGTAGAGGTTCCATGGGTTCATTCCAAGACCATGAATTTGCTGGCGGTTATTCTTATCTTCTGGGTGGTGGTAACGCTAGAACTGACTCGATGAATCTCAAAACTGATGTTATGAGAACATCTGGTTATCCTCAAAACCATGCTGATGGTGGTGATGACCCCACACATGGTGGTAACGCAAGACTGAAAGGTTGGTATAAGCGTTCTGGAACACGTCAAGCACTTGTATGGAATACTGAATCTTGGGTCACCTGGGATAATGGTCCTGGTGGTGACGGATGGAAGAAGATTCTCGGCACGATGTTAGGTCACATGTATGTTGGCACTGGCAATAACAACCAGAATGGTAATCAGCGTGTTGAGGATACAACTGGACTTCAGACAAGAGGTTTGAACTTCGGTAACATGGGTGAGGAAAACTTTGAAATGGGTATGAGAAAGGGTTACTGCTTAGGTAACTACAATGGTTCTCAGAATAACAACACCTTCAAGGTGAACTACGGCACAGATGCTTACAACAACCTTGGTGGTGCTTCTCCACCATCTGGTCATGGTGGCATGAGTTCTGCACACTGTTCATCTGCATCTGCTATCTCTGGTGTCAATGACGCTGGAACTGCATTATATGATTATGGTACAAATATCCCTAACTACTGA

Genome Context

Genome Context

Tertiary structure

PDB ID
56cdfcf3a778967369dba23defe441e9766e05af6ed2b6440c17d5d3da1e8211
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,3840
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
The Genome Sequence of Synechococcus phage S-RIM2 isolate R1_1999 Henn,M.R., Marston,M., Levin,J., Malboeuf,C., Casali,M., Russ,C., Lennon,N., Chapman,S.B., Erlich,R., Young,S.K., Yandava,C., Zeng,Q., Fitzgerald,M.F., Alvarado,L., Anderson,S., Berlin,A., Chen,Z., Freedman,E., Gellesch,M., Goldberg,J., Green,L., Griggs,A., Gujja,S., Heilman,E., Heiman,D., Hollinger,A., Howarth,C., Larson,L., Mehta,T., Neiman,D., Pearson,M., Roberts,A., Ryan,E., Saif,S., Shea,T., Shenoy,N., Sisk,P., Stolte,C., Sykes,S., White,J., Haas,B., Nusbaum,C. and Birren,B. 2011-09-23 — GenBank