Protein

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Genbank accession
YP_010357009.1 [GenBank]
Protein name
tail spike protein
RBP type
TF
Evidence GenBank
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,91
TSP
Evidence RBPdetect2
Probability 0,94
Protein sequence
MSTSKKASNYLHDKTNSVETVDRYKESTAEDWKEVAEISDNHAEGIDANTIRSISNEDAISSLQSGYNGIVLIADTKTEAGDYRPGEEGTYPNCGGLVYDPTDTDKGFDVKFNLTNGVWTKYSVDLVIDKADEGDTLPESTKYFDGAKTADYIRILNQNKTDKGGYEGTSQDLKNSFDNAVFDGAITYQTEAELLAVSPTPINGTPAKVANDSDPLKNGNWSVVSGAWVKDASVVSNIVDNDDISTEGSGLIISNRNSGTKKKGYKIIREGFDFLNIPLTYADSIWEIRYANDLNGETISIPEGVTLSFKGGSFENGTIVGDDTKIVSDIEFIIDVTCELEGTFITGDLYPEMFGAVGNGVVDDTLAVQKALDLANISSYKHVKLLKADYLISDSIILKDFVNLSGYGVDQSNFIWGGVDKEDERRTMLMATSRVSYANISNFGLIGQSGAGKEIADIGFDCAFIRDCNLSQIQVKSVSYISFDIRSSRNGGFFDTPCIHNTFNVLGTFNSKSNTRVPVTTHAVLGDPVIVDGVITDIPIISGGLYTGDAPYAFVVGTGSGFTGTLALDGSGAVSSVNIEDGGIDYLGAFAFASTFNYDQSTMVEYGFRIREDANANTFINCKTNGSRIGFSEEGNEELGDNSTNVANQNTFMGCNAEPSGVGFFLKSVFNNHYGSRAEQCGVPVLIAQDWDYGANPSGNNFSGLTVYGKPTFLDPPYIYGATPQYLMDSSSTFISMGGVSVLAKSDDLSIENYFRLPVGDSDNRPDTTGFSNADRQGLMYYDTESFPVFNKGNEWVNSMGDKIDEIYKYGIVFSTTSDITYTTSRYTNYFLDYRDDATPYVHSINIDRSSVYQGKRIHLKINKEASSNITSLTKDTGLTTVTSTTVASSTTVTMSVANGFVVGDYLAIAGANAGETLYTKIVKSLGSRTVEVETAPDISGSGLATDMLLYYTNSANFEQTTLELFYTGSRWIVWSKNN
Physico‐chemical
properties
protein length:979 AA
molecular weight: 106177,90560 Da
isoelectric point:4,44591
aromaticity:0,10521
hydropathy:-0,27457

Domains

Domains [InterPro]
DC_2149
ATT
94–230
DC_2149 DC_2249 DC_0823
IPR011050
STR
348–680
IPR011050
IPR012334
STR
351–710
IPR012334
YP_010357009.1
1 979
Architecture
ATT
ATT
STR
RBD
ATT 94-230 | ATT 273-476 | STR 477-710 | RBD 841-962 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_010357009.1
1 979
Domain Start End Length (AA) Confidence
N-terminal 1 364 364 0,9140
Central domain 365 753 390 0,9366
C-terminal 754 979 225 0,9636
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-364
Central
365-753
C-terminal
754-979

Taxonomy

  Name Taxonomy ID Lineage
Phage Polaribacter phage Leef_1
[NCBI] 		2745684 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Polaribacter sp. AHE13PA
[NCBI] 		2745562 Bacteroidota > Flavobacteriia > Flavobacteriales > Flavobacteriaceae > Polaribacter >

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_010357009.1 [NCBI]
Genbank nucleotide accession
NC_062750.1 [NCBI]
CDS location
range 5158 -> 8097
strand +
CDS
ATGAGTACATCAAAAAAAGCCAGTAATTATTTACATGATAAAACAAATTCTGTAGAAACTGTAGACAGATATAAAGAAAGCACCGCAGAAGATTGGAAAGAAGTTGCGGAAATTTCAGACAATCATGCAGAAGGTATAGATGCTAATACTATTAGGTCTATATCTAATGAAGATGCTATTTCTTCTTTGCAAAGTGGCTATAATGGAATTGTTTTAATAGCAGACACCAAAACAGAAGCTGGAGATTACAGACCAGGAGAAGAAGGCACGTATCCAAACTGTGGTGGTTTAGTTTATGATCCAACAGATACAGATAAAGGTTTTGACGTTAAATTTAATTTAACAAATGGTGTTTGGACTAAATACAGTGTAGATTTAGTAATTGATAAAGCAGACGAAGGAGATACGCTACCTGAAAGTACTAAGTATTTTGATGGTGCAAAAACCGCTGATTATATACGTATTTTAAACCAAAATAAAACAGATAAAGGTGGTTATGAAGGCACGTCTCAGGATTTAAAAAATTCTTTTGATAACGCTGTTTTTGATGGTGCTATAACATACCAAACAGAAGCTGAGTTATTAGCAGTATCTCCAACCCCTATAAACGGTACACCTGCAAAAGTGGCGAATGATTCAGACCCTTTAAAAAACGGTAATTGGTCGGTTGTTTCTGGTGCTTGGGTTAAAGATGCATCTGTTGTTTCTAATATTGTTGATAATGATGATATATCTACAGAAGGTAGTGGTTTAATTATATCAAATAGGAATAGCGGAACAAAAAAGAAAGGATATAAAATTATTAGGGAGGGTTTTGATTTCTTAAACATTCCTTTAACTTATGCTGATTCAATTTGGGAGATTAGATACGCAAATGATTTAAACGGTGAAACAATATCAATTCCAGAAGGCGTTACTTTATCATTTAAAGGAGGTTCTTTTGAAAACGGTACAATAGTAGGTGATGATACTAAAATAGTCTCTGATATTGAATTTATAATAGATGTAACTTGTGAATTAGAAGGTACATTTATTACGGGTGATTTATACCCTGAAATGTTTGGTGCTGTTGGTAATGGGGTTGTTGATGATACTTTAGCTGTTCAAAAAGCATTAGATTTAGCTAACATATCTAGTTACAAACACGTAAAGTTACTTAAAGCCGATTACTTAATAAGCGATAGTATTATCTTAAAAGATTTCGTAAATCTTAGCGGATATGGTGTTGATCAAAGTAACTTTATTTGGGGAGGTGTAGATAAAGAAGATGAAAGACGTACCATGTTAATGGCTACATCACGTGTTAGTTACGCAAATATTAGTAATTTTGGGTTAATTGGGCAGAGTGGAGCTGGTAAGGAAATAGCAGATATTGGTTTTGATTGTGCATTTATAAGAGATTGTAATTTATCACAAATACAAGTTAAATCTGTTTCTTATATATCTTTTGATATCAGAAGTAGTAGAAATGGTGGTTTCTTTGATACGCCTTGTATTCATAATACATTTAATGTGTTAGGTACATTTAATAGTAAAAGTAATACTAGGGTACCTGTAACTACTCATGCAGTATTAGGTGACCCAGTAATTGTGGACGGAGTTATAACAGATATTCCTATTATAAGTGGTGGCTTATATACTGGTGATGCACCTTATGCTTTTGTAGTAGGTACTGGTAGTGGTTTTACTGGAACTTTAGCTTTAGATGGTAGTGGTGCGGTTTCATCTGTTAATATAGAAGATGGTGGTATTGATTATTTAGGTGCGTTCGCTTTTGCGTCTACTTTCAATTACGACCAATCAACTATGGTAGAATATGGTTTTAGAATTAGAGAAGATGCTAACGCAAATACATTTATAAACTGCAAAACAAACGGTTCAAGAATTGGATTCTCAGAAGAGGGTAATGAAGAGCTTGGTGACAACTCTACAAACGTAGCTAACCAAAACACTTTTATGGGTTGTAATGCCGAACCATCAGGTGTTGGTTTTTTCTTAAAGTCTGTATTTAATAATCATTATGGTTCTAGGGCTGAACAATGTGGAGTACCTGTATTAATTGCACAAGATTGGGATTACGGGGCAAATCCATCAGGTAATAATTTTAGCGGATTAACAGTTTACGGAAAACCTACATTTTTAGACCCTCCATATATTTACGGAGCAACACCACAGTATTTAATGGACTCGTCTAGTACATTTATATCAATGGGAGGGGTTAGCGTTTTAGCTAAAAGTGACGACCTTAGTATTGAGAATTACTTTAGATTACCAGTAGGTGATTCTGATAATAGACCTGATACTACTGGGTTTTCAAATGCAGATAGACAAGGTTTAATGTATTACGACACAGAAAGTTTCCCAGTATTTAATAAGGGTAATGAATGGGTTAATTCAATGGGTGATAAAATAGATGAAATTTATAAATATGGTATTGTATTTAGTACTACGTCAGATATAACTTATACTACATCTAGGTACACAAACTATTTTTTAGATTATAGAGATGATGCAACACCTTATGTACATAGTATTAATATAGATAGGTCTAGTGTTTATCAAGGAAAAAGAATCCACTTAAAAATAAATAAAGAAGCTTCTTCAAATATAACATCTTTAACTAAAGATACTGGTTTAACAACTGTTACAAGTACAACTGTAGCATCATCAACAACTGTAACTATGAGTGTTGCAAATGGTTTTGTTGTAGGAGATTATTTAGCTATAGCAGGAGCTAATGCAGGTGAAACATTATACACTAAGATTGTTAAATCTTTAGGAAGTAGAACTGTAGAGGTTGAAACAGCACCAGACATTAGTGGTTCGGGTTTAGCAACAGATATGTTATTATACTACACTAATTCAGCTAACTTTGAACAAACAACATTAGAGTTGTTCTACACGGGTTCAAGATGGATAGTTTGGAGTAAAAACAATTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
211121c606120626ecea614ec04687420866b132dbc8831e72ea41e827165cd0
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,6629
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Highly diverse flavobacterial phages as mortality factor during North Sea spring blooms Bartlau,N., Wichels,A., Krohne,G., Adriaenssens,E.M., Heins,A., Fuchs,B.M., Amann,R. and Moraru,C. 2021 — GenBank