Protein

View in Explore
Genbank accession
QQO87402.1 [GenBank]
Protein name
hypothetical protein
RBP type
TSP
Evidence RBPdetect
Probability 0,89
TF
Evidence RBPdetect2
Probability 0,79
Protein sequence
MALVIHYTRNEDGTFDVKRYRDNPMNFVVNHVPDGVPVRVFIDEIGEDNDVTEDFEALKENATFHIVESAGGGAIKGVMKIFSVILKPLAKLLSPSVKGASSNLANSQADSPNNSLTDRNNKARPYERSYDICGTVQTIPNNLMSTYKVFNAAGKIVEYGYYDAGRGYLDIHPDGITDGDTRVSDITGTSVAVYAPYTSPNNTSTPQVMVGDPIEQGLYITVESNEVDGVVLKAPNGLGISFSYMSGYPSLSGNIGTIYDPTGGSDFSGVLVPNDTFSLVSAWTNTDVDLSGGGYQVLSVSEGTITFIVPGGLIGRWQEIRPGSFFRGDGEASLQPDNTYEKTLTDWVSINRTEVERIVANIAAANGMYKDNGKSKTLASVTAEIQYQLLDENSVPYGPIYTAQGTVSGRTPDYNGVTIYADLPVVSRVRVRARRVTDLDFNFEGSVVDEITYVNLYGQTRDNTPHYGNRTTVHSMRKQTPRAAEVKQPQLRMIATEMVHKYLGNGVFEDTMTPNTQAVQSLIRLARDPDVGGLNLTVRNMDKLLAVQNEVEAYFGDKQAGEFCYTFDDYKTTMQDIVSTIADAIFCTPYRRGADILLDFERPRMGPEMVFTHRSKAGTSEKWTRTFNDAQVFDSLKFSYIDPKTNVKETITIPETGGLKTETYDSKGIRNYKQAFWAANRRHQKNILKKISVSFTATEEGIFALPNRAVSVVKGSRMATYDGYVTAVNGLTVELSQPVKFTSGDDHYLVLKLRDGGVQSVRVVPGAHDRQVIMTSVPQEAIYTGNSALKTEFSFGNEARHNAQMILVSTVDPGDDRTVKITGFNYDKDFYKFDNVPPFGRAFSNGFDNGFN
Physico‐chemical
properties
protein length:852 AA
molecular weight: 93914,93170 Da
isoelectric point:5,30822
aromaticity:0,09742
hydropathy:-0,36479

Domains

Domains [InterPro]
DC_0118
STR
1–686
DC_0118 DC_0808
NF040662
Unmapped
352–832
NF040662
QQO87402.1
1 852
Architecture
STR
RBD
STR 1-686 | RBD 703-846 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
QQO87402.1
1 852
Domain Start End Length (AA) Confidence
N-terminal 1 231 231 0,9641
Central domain 232 430 200 0,6703
C-terminal 431 852 421 0,1473
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-231
Central
232-430
C-terminal
431-852

Taxonomy

  Name Taxonomy ID Lineage
Phage Salmonella phage vB_SenS_ER13
[NCBI] 		2801557 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Salmonella typhimurium
[NCBI] 		90371 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
QQO87402.1 [NCBI]
Genbank nucleotide accession
MW355454 [NCBI]
CDS location
range 26490 -> 29048
strand +
CDS
TTGGCGCTAGTAATCCACTATACCCGTAACGAAGACGGCACATTTGACGTCAAACGTTATCGCGATAATCCAATGAACTTCGTCGTGAACCATGTTCCGGACGGGGTGCCGGTGCGTGTTTTCATTGACGAAATCGGAGAAGATAACGACGTAACAGAAGACTTCGAAGCACTGAAAGAAAACGCGACTTTCCACATTGTGGAATCTGCCGGTGGTGGCGCTATTAAAGGCGTCATGAAGATTTTTAGCGTTATCCTTAAACCGCTAGCGAAACTATTATCACCATCCGTGAAAGGGGCGTCATCTAACCTTGCGAACTCGCAGGCGGATTCCCCAAACAACAGTCTTACCGACCGTAACAACAAGGCGCGTCCGTACGAGCGCAGCTACGACATCTGCGGAACGGTGCAAACAATACCAAATAACCTTATGTCTACTTATAAGGTATTTAACGCCGCCGGTAAAATTGTAGAGTACGGGTATTACGACGCCGGGCGTGGTTACCTCGACATACACCCGGATGGCATAACGGACGGGGATACTCGTGTATCAGATATAACAGGTACGTCGGTTGCCGTGTACGCGCCCTATACATCACCAAATAACACATCGACACCCCAGGTCATGGTCGGGGACCCGATAGAGCAGGGCCTGTATATTACCGTAGAATCTAACGAAGTGGACGGCGTGGTTCTTAAAGCACCCAACGGTCTGGGCATTTCTTTTTCTTACATGTCCGGGTATCCGTCTTTGTCAGGAAACATTGGCACGATATATGACCCAACAGGTGGTTCGGATTTTTCTGGGGTGTTGGTTCCTAATGATACGTTTTCGTTGGTGTCAGCGTGGACAAATACGGACGTTGACTTGTCCGGCGGCGGGTATCAGGTGTTAAGCGTATCCGAAGGGACCATTACCTTTATCGTGCCTGGCGGCCTCATCGGGCGGTGGCAAGAAATAAGACCAGGTTCATTTTTCCGCGGTGACGGAGAGGCGTCGCTGCAACCGGATAATACATACGAGAAAACATTAACCGATTGGGTGTCTATAAACCGCACCGAGGTTGAGCGCATAGTCGCCAATATTGCGGCCGCAAATGGCATGTATAAAGACAACGGCAAGTCAAAAACACTGGCGTCGGTTACCGCTGAGATTCAGTACCAGCTACTTGATGAAAATAGCGTTCCTTACGGGCCAATATACACGGCGCAAGGAACCGTGTCCGGGCGTACTCCAGACTACAACGGTGTCACTATTTACGCCGACCTACCGGTCGTGTCGAGGGTGCGTGTGCGGGCCAGACGGGTGACAGACCTTGACTTTAATTTCGAGGGGTCTGTAGTTGATGAGATAACATATGTTAACTTGTACGGGCAAACACGCGATAACACTCCGCACTACGGCAACAGGACTACCGTACACTCAATGCGCAAGCAGACACCACGCGCCGCGGAAGTCAAACAGCCACAGTTACGTATGATTGCCACCGAAATGGTACACAAATACCTTGGTAATGGTGTTTTCGAAGATACGATGACCCCCAATACCCAAGCCGTGCAATCTCTTATCCGCCTGGCCCGTGACCCGGATGTGGGAGGTTTAAACCTGACAGTACGCAACATGGATAAGTTACTTGCCGTGCAGAACGAGGTCGAAGCGTATTTCGGTGACAAACAGGCGGGGGAATTTTGTTACACGTTTGATGACTATAAAACCACTATGCAGGATATAGTTAGTACTATAGCCGACGCTATCTTCTGTACTCCATATAGGCGTGGGGCGGATATCCTTCTCGATTTTGAACGCCCTCGCATGGGTCCTGAGATGGTGTTCACCCACCGAAGCAAGGCTGGTACTTCCGAAAAATGGACCAGAACCTTTAACGATGCTCAGGTGTTCGATAGTCTTAAATTCTCGTACATAGACCCTAAAACAAACGTTAAAGAAACCATAACAATACCTGAAACCGGGGGCCTTAAAACGGAGACTTATGACTCAAAAGGAATCCGCAACTATAAGCAGGCTTTCTGGGCGGCAAACCGTCGCCACCAGAAGAACATTTTAAAGAAAATTTCGGTGTCGTTTACCGCCACTGAAGAGGGTATTTTTGCCCTTCCGAATCGTGCCGTTAGTGTGGTTAAGGGTTCGCGTATGGCTACTTACGACGGCTACGTAACCGCGGTTAACGGTCTTACCGTAGAGCTATCCCAGCCGGTTAAGTTCACATCCGGAGATGACCATTATTTGGTTCTGAAGTTACGTGATGGCGGAGTCCAAAGTGTTCGTGTTGTCCCTGGTGCGCATGACCGACAAGTAATTATGACGTCTGTGCCGCAAGAAGCCATTTACACGGGCAATAGCGCCCTGAAAACTGAATTTTCATTCGGCAACGAAGCAAGGCATAATGCTCAGATGATTCTTGTTTCTACAGTAGACCCCGGCGATGACAGAACAGTCAAAATAACCGGGTTTAACTATGACAAGGATTTCTATAAGTTCGACAACGTACCGCCTTTCGGTCGTGCGTTCTCTAACGGATTCGATAACGGTTTTAACTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
e2249dd2abf94a7723c1f5e6e6a2d1c364ad114aed57e0534a7fb6bcddb82c68
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7994
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Isolation and characterisation of bacteriophages with activity against invasive non-typhoidal Salmonella causing bloodstream infection in Malawi Rodwell,E.V., Wenner,N., Pulford,C.V., Cai,Y., Bowers-Barnard,A., Beckett,A., Rigby,J., Picton,D., Blower,T.R., Feasey,N.A., Hinton,J.C.D. and Perez-Sepulveda,B. — — GenBank