Protein

View in Explore
Genbank accession
YP_010112841.1 [GenBank]
Protein name
virion structural protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,87
Protein sequence
MNNVQTNTFTQGMNLDTDVTMIPDNQYRYAENVRVITDTDGTTGVLQNVLDTRMVEGGDFLNPNETVLATTTVDKYGVILTVDGTKICRIYRVEGYDDLPLKATVIVKGELGYNVNSKVKIVANYESATIIKIYIASPDQTIKTLNIMDGRYMQTPNGNPLLDSNGNLKNVSLLDIQISTLLGAPEVISLGGGSLTTGIVQYSYQLFNARGSATNFSPVSNAIHLTNSEVSGGLKNYMGNNKDVNSGKSVNFKVKLNDVPEGLFDNIRLIRIKYNDFTEDPLIEIFQENEISSSTNEYIFNDTGGNVINTITIEEFNKIQESTFTAATIESKDNILFAANIKESTWKPQYDARSYRFTASNKLILNGSSEDQNIEVIVTNSNLNSTLSSIPESHDCINPYNSQDPDFSNRDVCKYLFGSTTLGGTGLNIDYEFVTTDVMLDDNFTNTLTINTPVTTSDKITINNLNGSTVSLISLGASGISRFRNYADPYFASKYKGYQRDEVYRFGIVFFNERNVATPVYWIGDIKFPHCWEACPWYVQDLTLYGKAIGINFKIKNYPDGAKAYQIVRCNRTKEDRTILTQALLSGTVSYPYHSVRDADYDIASENTRRPYTFLGNSWLKVGLITDSIIGNTSYLWMVSERVDNYISTLISPEIDANLDDMAKSVKGCRADMCLKLDPRTNHKEHISSVGGQATAYGYYVKSNRTLLVRSGVAVTNEYASQSSRVGSIASSSSEALNDIFMVGNAAEWTGITNLIGKRYIAHYTGFGTTRGKFDINESVSPIIMEGFSWPDAASKHSSISGKTYLNATVSMNGRQDNQEIYNKTGYYGNCVVVTRDNNNIGVQQNINIDRAGTEPMSPRVSGTIADLIREFNYTQFTTPVVNIKTNNIPYSGNTYSARSNSTYVSTYTYHDLSDRNAIVFGGDTYLGVLDHKTVMYIPQFWGGVQSPDVNCGVTVSDYIPFETTINLALLYGSSASRVGSSDLDYVDPYLSLSISGASYGGHTLSKPYFAYNDAYSRLPDALMYVTDSNYSISNLLSGNRIRYSGTKTANEISDSWTSFKPADYLDVDSSHGDITNLKQFNNQLLFWQKDAVGIASVNDRSLITDNNQAPLVLGTGGVLDRYDYLTTSNGSDTPNDKSIVTSPNGLYWYDDSKNEICSYGNGVLKLSKAKSVLSWLNTDKQKAKVSIYDPKFNEVQMGFEDKVLTYDEQIQQFSSFRTFNPDNYLSFPDKLLYIKDLIIKESADFPLNELKSRLLIVINKDPLLTKTFDNVFFSGEFDDVRKMMQVIKFTTKTQEGTIFKDNTEVNNPIEQREDTFRFAVGREKTSVDDMSLPGRMKGKYMICDYIINCNDQHNFRLPNINTTYRYSMV
Physico‐chemical
properties
protein length:1370 AA
molecular weight: 152968,13120 Da
isoelectric point:5,10973
aromaticity:0,10584
hydropathy:-0,36628

Domains

Domains [InterPro]
IPR057889
STR
5–1237
IPR057889 IPR057888
DC_1659
RBD
1220–1370
DC_1659
YP_010112841.1
1 1370
Architecture
STR
RBD
STR 5-1237 | RBD 1238-1370
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_010112841.1
1 1370
Domain Start End Length (AA) Confidence
N-terminal 1 388 388 0,5096
Central domain 389 587 200 0,5116
C-terminal 588 1370 782 0,1836
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-388
Central
389-587
C-terminal
588-1370

Taxonomy

  Name Taxonomy ID Lineage
Phage uncultured phage cr113_1
[NCBI] 		2772087 Uroviricota > Caudoviricetes > Crassvirales > Loutivirinae > Buchavirus
Host No host information

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_010112841.1 [NCBI]
Genbank nucleotide accession
NC_055896 [NCBI]
CDS location
range 48396 -> 52508
strand -
CDS
ATGAATAATGTTCAAACCAATACATTCACACAAGGTATGAATCTAGATACAGATGTAACTATGATACCAGACAATCAGTATAGATATGCGGAAAATGTACGTGTAATTACTGATACAGATGGTACTACAGGTGTGTTGCAGAATGTATAGGATACTAGAATGGTAGAAGGAGGAGACTTCTTGAACCCCAATGAAACAGTACTAGCTACTACTACGGTTGATAAGTATGGTGTCATACTTACTGTAGATGGTACTAAAATATGCAGAATATATAGAGTAGAAGGTTATGATGATTTACCATTGAAAGCTACAGTAATAGTTAAAGGTGAACTGGGTTATAATGTAAATTCTAAAGTAAAAATAGTAGCTAACTATGAATCTGCTACTATTATTAAAATCTATATAGCCTCTCCAGATCAGACTATTAAGACTCTTAATATAATGGACGGTAGATATATGCAAACTCCTAACGGTAATCCTTTACTAGACTCTAATGGTAATCTAAAGAATGTTAGTCTGTTGGATATACAAATATCTACTTTACTCGGAGCACCAGAAGTAATATCATTGGGAGGAGGTTCGCTAACTACCGGTATAGTACAGTACTCTTATCAGTTATTTAATGCTCGTGGTTCTGCTACCAACTTCTCTCCAGTTAGTAATGCTATACATCTTACTAATAGTGAAGTATCAGGAGGATAGAAGAACTATATGGGCAATAATAAAGATGTAAACTCTGGTAAAAGTGTTAACTTTAAAGTTAAGTTAAATGATGTACCTGAAGGATTATTTGATAATATTAGATTAATTCGTATAAAGTATAATGACTTTACTGAAGATCCTTAGATTGAAATATTTCAAGAAAACGAAATATCGTCTTCTACTAATGAATACATATTTAATGATACTGGTGGTAATGTAATAAATACTATTACTATAGAAGAGTTTAATAAGATACAAGAGAGTACATTTACTGCGGCTACTATAGAATCCAAGGATAATATATTGTTCGCAGCTAATATTAAAGAATCTACATGGAAACCACAATATGATGCTAGATCATATAGATTTACTGCTAGTAATAAGTTAATACTTAATGGTTCTAGTGAAGATCAGAATATAGAAGTAATAGTAACAAATTCTAATCTTAATAGCACCTTGAGTTCTATACCAGAATCTCATGACTGTATTAATCCGTATAACAGTCAAGATCCTGATTTTAGTAATAGAGATGTATGTAAGTATTAGTTTGGTAGTACTACGTTAGGAGGTACTGGTCTAAACATAGATTACGAATTCGTTACTACAGATGTAATGCTAGACGATAACTTCACAAATACTCTTACTATAAATACTCCTGTTACTACTAGTGATAAGATTACCATAAATAATCTTAATGGTTCTACTGTATCATAGATATCTCTAGGAGCATCTGGTATAAGTAGATTCAGGAATTATGCTGATCCTTACTTTGCTAGTAAGTATAAAGGGTATCAGAGAGATGAAGTATATAGATTTGGTATTGTATTTTTTAATGAAAGAAATGTTGCTACTCCAGTATATTGGATTGGGGATATTAAATTCCCTCATTGTTGGGAAGCATGCCCATGGTATGTACAAGACCTTACTCTTTATGGAAAAGCAATTGGTATAAACTTTAAGATAAAGAATTATCCAGATGGAGCTAAAGCATATCAAATAGTAAGATGTAATAGAACAAAAGAAGATAGAACTATATTAACTCAAGCTCTATTATCTGGAACTGTATCATATCCATATCATTCTGTTAGAGATGCAGATTATGATATAGCGTCTGAGAATACCAGAAGACCATATACATTCTTAGGGAATAGTTGGTAGAAAGTAGGTTAGATAACTGATTCTATTATTGGAAATACTAGTTACTAGTGGATGGTATCTGAAAGAGTTGACAACTATATATCAACACTTATTAGTCCAGAAATTGATGCTAATTAGGATGACATGGCGAAGAGTGTCAAAGGTTGTAGAGCAGATATGTGTTTGAAATTAGATCCTAGAACTAATCATAAAGAACATATAAGTTCTGTTGGTGGACAAGCTACAGCATATGGCTATTACGTTAAATCTAATAGAACGTAGTAGGTAAGAAGTGGAGTAGCAGTTACTAATGAATACGCTAGCCAAAGTTCTAGAGTAGGTTCAATAGCAAGTTCTAGTTCAGAGGCTCTTAATGATATATTCATGGTAGGAAATGCAGCAGAGTGGACTGGTATAACTAATTTGATAGGAAAGAGATATATAGCTCACTATACTGGATTTGGAACTACTAGGGGTAAATTTGATATAAATGAATCTGTTAGTCCTATTATAATGGAAGGATTCTCTTGGCCGGATGCAGCATCTAAGCACTCTTCTATTTCTGGTAAAACTTATCTTAATGCTACCGTAAGTATGAATGGTAGACAGGATAATCAAGAAATATACAATAAGACTGGTTACTATGGAAATTGTGTTGTTGTCACTAGAGATAACAATAATATAGGTGTGCAACAGAATATAAATATAGATAGGGCTGGTACAGAACCTATGAGTCCTAGAGTTTCTGGTACTATTGCTGATCTTATTAGAGAGTTTAATTATACTCAATTTACTACACCAGTAGTTAATATAAAAACTAATAACATACCATATAGTGGAAATACATATAGTGCTCGTAGCAATTCCACTTATGTAAGTACATATACATATCATGACTTGTCTGATCGTAATGCTATAGTATTTGGTGGTGATACTTATTTAGGAGTATTAGATCATAAAACTGTAATGTATATTCCTCAATTCTGGGGAGGTGTACAAAGTCCCGATGTGAACTGTGGAGTTACAGTTTCAGACTATATTCCTTTTGAGACTACTATTAATCTTGCTTTATTGTACGGTAGTTCCGCATCTAGAGTTGGATCTAGTGATCTAGATTATGTAGATCCATATTTATCATTATCTATCTCTGGTGCATCATATGGTGGTCATACATAGAGTAAACCATATTTTGCATATAATGATGCTTACTCTAGATAGCCAGATGCTTAGATGTATGTAACAGATTCTAATTACTCTATTAGCAATTTGTAGTCTGGTAATAGAATTAGATACTCTGGTACTAAGACTGCTAATGAGATATCAGATAGTTGGACATCATTTAAACCAGCAGATTATCTTGATGTAGATTCATCTCATGGAGATATTACAAACTTGAAGCAGTTTAATAATCAGTTATTATTCTGGCAGAAAGATGCCGTAGGAATAGCATCTGTAAATGATAGATCACTTATAACAGATAACAATCAAGCTCCTCTAGTATTAGGTACTGGTGGTGTACTGGATAGATATGACTATTTAACTACATCTAATGGATCTGATACACCGAACGATAAGAGTATTGTAACTAGTCCTAATGGTTTATACTGGTATGATGATAGCAAGAATGAGATATGCTCATATGGTAATGGAGTATAGAAATTATCTAAAGCTAAGAGTGTATAGTCATGGTTGAATACTGATAAACAAAAAGCAAAAGTAAGTATATATGATCCTAAGTTTAACGAAGTACAGATGGGATTTGAAGATAAAGTACTTACTTATGATGAACAAATTCAACAGTTCTCTTCGTTTAGAACTTTTAATCCGGATAACTACTTATCATTTCCAGACAAACTCTTGTATATTAAGGACTAGATAATAAAAGAAAGCGCAGATTTTCCGTTAAATGAATTAAAGTCTAGATTATAGATAGTAATCAATAAAGATCCATTATTAACTAAGACGTTTGATAATGTGTTCTTTAGTGGAGAATTTGATGATGTTAGAAAGATGATGCAAGTTATTAAATTCACTACAAAGACTCAAGAAGGAACTATATTTAAAGATAATACAGAAGTAAATAATCCAATAGAACAGCGAGAAGATACATTTAGGTTTGCTGTTGGTAGGGAAAAAACTAGTGTAGATGACATGTCTCTTCCTGGTAGAATGAAAGGAAAGTATATGATATGTGATTATATTATTAATTGCAACGATCAACACAATTTCAGACTCCCTAATATAAACACAACATATAGATATTCAATGGTATGA

Genome Context

Genome Context

Tertiary structure

PDB ID
6ad90fd842a776f3be193b804781e7a6740e2742dfc31e1868f36f5be7061a59
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,7545
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Taxonomic proposal: Crassvirales, a new order of highly abundant and diverse bacterial viruses Shkoporov,A.N., Stockdale,S.R., Guerin,E., Ross,R.P. and Hill,C. 2023-03-24 — GenBank