Protein

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Genbank accession
YP_009594800.1 [GenBank]
Protein name
tail fiber protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,85
TF
Evidence RBPdetect2
Probability 0,60
Protein sequence
MSIRFNHASNTMTSTDTATIVIEGGTPSIPRPLRLDASSVIFPNKTLPAGEAGAVVFDTSSKSLKYHDGFQWVELLSQDEILAPVQISLTDIYNQLANRVKTVSYTSSTVPSASISGTNLNIVFPSSTSGGGTAVPGLFTSSPPGSIMQYSLSSGQSVASIREQMSGVTNGQSGRNGTAGAPYVTKTGWCFADGAYWTWNGEGGTVTKVVPNLNQNAYLKGITTSGVTKTDAVIADSGTISSTSITIPDHYHGVGSMLGLSGSQGDDVALIIGKTFNDGRVYSGAIVTGDKQKYWTTSVNGSDTRTAISTTYAIYPNGNTSSHTHNLTGIDVGHFNVAILYNIAEPSLALNQTAGDARYVLKSGDVMTGSLTIANSAAIQANDTNLVLWFRNTSGGERGAIYHSNTTNTLRFRSAGGTEMILSNTAGLTINSLVVSSQSATVAGRNVVRAINGTTADANGNVTLSITGGVVTNVRRGAEIAVNRYTLGGESFVYRCGEGQYVTGFNIWSKSGNNDEFRDMYSRPVQILIDGAWRTISDV
Physico‐chemical
properties
protein length:539 AA
molecular weight: 56646,20370 Da
isoelectric point:6,45347
aromaticity:0,07607
hydropathy:-0,12152

Domains

Domains [InterPro]

No domain annotations available.

Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_009594800.1
1 539
Domain Start End Length (AA) Confidence
N-terminal 1 167 167 0,8509
Central domain 168 366 200 0,3851
C-terminal 367 539 172 0,9667
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-167
Central
168-366
C-terminal
367-539

Taxonomy

  Name Taxonomy ID Lineage
Phage Pectobacterium phage vB_PcaM_CBB
[NCBI] 		2772511 Uroviricota > Caudoviricetes > Mimasvirus >
Host Pectobacterium carotovorum subsp. carotovorum
[NCBI] 		555 Bacteria > Proteobacteria > Gammaproteobacteria > Enterobacteriales > Enterobacteriaceae > Pectobacterium

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_009594800.1 [NCBI]
Genbank nucleotide accession
NC_041878 [NCBI]
CDS location
range 185445 -> 187064
strand +
CDS
ATGAGTATAAGATTTAATCATGCTTCCAACACAATGACTAGTACTGATACAGCTACTATTGTCATTGAGGGTGGAACGCCAAGTATTCCACGTCCATTGAGACTTGATGCTTCTTCTGTAATTTTTCCAAATAAAACATTACCAGCAGGTGAAGCAGGTGCAGTAGTTTTTGATACATCATCAAAATCACTAAAATATCATGATGGTTTCCAATGGGTAGAACTATTATCACAAGATGAAATACTTGCACCAGTTCAAATATCATTGACTGACATTTATAACCAGTTAGCTAACCGTGTAAAAACGGTTTCATATACATCAAGTACTGTTCCTTCTGCATCAATTAGTGGAACTAACTTGAATATTGTTTTCCCATCTAGTACTTCTGGTGGTGGAACAGCAGTTCCTGGATTGTTTACTTCATCCCCTCCAGGAAGTATAATGCAGTACTCACTATCTTCAGGACAATCAGTAGCTAGTATTCGTGAACAAATGAGCGGAGTTACTAATGGTCAAAGTGGTAGAAACGGTACAGCAGGTGCACCATATGTTACTAAAACTGGTTGGTGTTTTGCTGATGGTGCATATTGGACATGGAATGGTGAAGGTGGAACTGTAACTAAGGTTGTTCCTAATTTAAACCAAAATGCATACTTAAAAGGTATCACCACAAGTGGTGTAACAAAAACTGATGCAGTAATTGCTGATTCTGGTACAATAAGTAGCACATCAATAACTATACCAGATCACTATCATGGTGTTGGTAGCATGTTGGGGTTAAGTGGATCACAAGGTGATGATGTTGCATTAATTATTGGTAAAACTTTTAACGATGGTCGAGTATATAGTGGTGCAATTGTAACTGGTGATAAACAAAAATATTGGACAACATCAGTTAACGGTTCAGACACACGTACTGCTATTAGTACTACATATGCAATTTACCCAAATGGAAATACAAGTTCACACACCCATAACCTAACAGGTATTGATGTTGGACACTTTAACGTTGCAATTTTATATAATATTGCAGAACCAAGTTTAGCTTTGAACCAAACAGCGGGTGATGCTCGTTATGTTCTTAAATCTGGTGATGTAATGACTGGCTCATTAACTATTGCTAACAGTGCTGCGATTCAAGCTAATGATACAAACTTAGTATTATGGTTCCGTAACACTTCAGGTGGTGAACGTGGTGCAATTTATCATAGCAATACTACAAACACATTACGCTTCCGTTCTGCTGGCGGTACTGAAATGATACTTTCAAATACTGCTGGATTAACTATTAATAGTTTAGTAGTATCTTCACAAAGTGCAACTGTTGCTGGTCGTAATGTTGTTCGTGCAATTAACGGAACAACAGCAGATGCTAATGGTAACGTTACATTAAGCATTACTGGTGGTGTAGTAACAAACGTTCGTCGTGGTGCTGAAATAGCTGTGAACCGTTATACATTGGGTGGTGAATCATTTGTGTACCGTTGTGGTGAAGGTCAATATGTTACTGGTTTTAACATATGGTCAAAAAGTGGTAATAACGATGAATTCCGTGATATGTATTCACGTCCTGTTCAAATTTTAATTGATGGTGCATGGAGAACAATTTCTGATGTTTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
538bcbbf0b15987c070de27834f4275a9d6ccfb4b68d6f78cf63a124801e4c85
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,5604
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50