Protein

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Genbank accession
QVV98605.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence Phold
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,90
Protein sequence
MANWSNITPENSNEKDDEFIIRHQGINHLQKRDVVAASMSNARWLAEGNYLAGSEVKGSDNIWYIAVVNTGSDYGNSTNPVTKVDDSVWVQKVYEVTPLNDDWNGFFTRNHITQLPSPAGVPATSGSGGTVYGADDEWSIGNFTTGGVISLDNDGLVFSQGIYKLFTFTVEQLSLIDVTKVPVYIVGQDGSRHFVKHNGTGVVVTKPDTTTLKVQVNNAILAELGITKVFSFFVTATVGFVQEKGDLALPSSLGFFEIEGLPQENGFIITNMTLGGNRVIIQNVTSGIITDGGSATVPWITPFPNAVFNCVASPLGLGVNAASSSMATGNPTVNGVNVYNWGKIQAKVRIFAIGY
Physico‐chemical
properties
protein length:355 AA
molecular weight: 38080,25080 Da
isoelectric point:4,92563
aromaticity:0,09859
hydropathy:-0,00254

Domains

Domains [InterPro]
DC_0226
STR
1–354
DC_0226
G3DSA:2.60.40.3940
RBD
262–355
G3DSA:2.60.40.3940
QVV98605.1
1 355
Architecture
STR
STR 1-355
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
QVV98605.1
1 355
Domain Start End Length (AA) Confidence
N-terminal 1 133 133 0,9418
Central domain 134 332 200 0,0924
C-terminal 333 355 22 0,9985
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-133
Central
134-332
C-terminal
333-355

Taxonomy

  Name Taxonomy ID Lineage
Phage Vibrio phage ICP1
[NCBI] 		979525 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Vibrio cholerae O1
[NCBI] 		127906 Bacteria > Proteobacteria > Gammaproteobacteria > Vibrionales > Vibrionaceae > Vibrio

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
QVV98605.1 [NCBI]
Genbank nucleotide accession
MW794147.1 [NCBI]
CDS location
range 37044 -> 38111
strand -
CDS
ATGGCAAACTGGTCAAATATTACACCAGAGAATAGTAATGAAAAAGATGATGAGTTTATTATTCGTCACCAAGGTATCAACCACTTACAGAAACGAGATGTAGTTGCTGCTAGTATGAGCAATGCACGTTGGCTTGCTGAAGGTAACTATTTAGCTGGAAGTGAAGTAAAGGGTAGTGATAATATTTGGTATATTGCGGTCGTAAACACAGGTAGTGATTACGGGAACAGTACCAACCCTGTAACTAAGGTTGATGATTCGGTATGGGTACAAAAAGTATATGAAGTCACCCCCCTAAACGATGACTGGAACGGTTTCTTCACAAGAAACCACATAACTCAACTACCATCACCTGCAGGAGTACCAGCTACCAGTGGTTCTGGGGGTACTGTATATGGTGCTGATGACGAGTGGTCTATTGGAAACTTCACCACAGGTGGGGTTATTTCGCTTGATAATGATGGTCTTGTATTTTCTCAAGGAATCTACAAACTATTCACGTTCACTGTTGAGCAGTTGTCCCTTATTGATGTCACCAAAGTTCCGGTCTATATCGTTGGTCAAGATGGTTCGCGGCACTTTGTTAAACACAACGGAACGGGTGTGGTTGTCACAAAGCCAGATACCACAACTCTAAAAGTGCAGGTTAACAATGCAATTCTTGCCGAGCTTGGTATTACGAAAGTGTTTAGTTTTTTTGTAACTGCTACGGTTGGTTTCGTTCAAGAAAAAGGTGATCTTGCTCTACCGTCTTCGCTTGGATTTTTTGAGATCGAGGGTCTTCCTCAAGAAAACGGCTTTATCATCACAAATATGACTCTTGGGGGGAATAGGGTAATCATACAAAACGTAACCTCCGGAATAATTACCGATGGGGGTAGTGCAACTGTACCATGGATTACCCCGTTCCCTAATGCGGTTTTCAACTGCGTAGCTTCACCACTAGGTCTGGGAGTAAACGCGGCCTCTTCGTCGATGGCCACAGGTAACCCTACTGTTAATGGAGTTAACGTATACAACTGGGGTAAAATACAAGCTAAAGTAAGAATATTTGCGATAGGTTATTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
8ac5000157a0d79b27a51ea3a8016a411470c94dac66ad23d422737028d845a7
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,5914
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Vibrio cholerae in Democratic Republic of Congo is Clonal and is Associated with a Unique ICP1 Bacteriophage Alam,M.T., Pisiae,T., Salemi,M., Angermeyer,A., Seed,K.D., Camilli,A., Morris,G. Jr. and Ali,A. 2021-08-03 — GenBank