Protein

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Genbank accession
UJP30002.1 [GenBank]
Protein name
tail spike protein
RBP type
TF
Evidence Phold
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,91
TSP
Evidence RBPdetect2
Probability 0,96
Protein sequence
MSSGCGDVLSLNDLQVAKKHQIFEAEVITGKQGGVAGGADIDYATNQVTGQTQKTLPAVLRDAGFSPASFNFTTGGTLGINDANKAVLWPKEDGGDGNYYAWRGSLPKVIPAASTPLTTGGISDSAWDAFGDITFRAEADKKFKYSVKLSDFTTLQQLADAAVDSVLIDRDYTFTNGETVNFGGKVLTIDCKAKFIGDGALIFTNMASGSIIEKPFMESATTPWVIYPWTEDGKWITDAQAVAATLKQSKTEGYQPGVNDWVKFPGLEALIPQNVKDQHIASTLDIRECVGIEVRSAGGLMAAYLFRNCHHCKVIDSDTIIGGKEGIITFENLSGEWGIGNYAIGGRVHYGSGSGVQFLRNNGGASHNGGVIGVTSWRAGESGFKTWQGSVGAGTARNYNLQFRDSVALSPVWDGFDLGSDPGMAPEDDRPGDLPVSQYPMHQLPNNHMVDNILVMNSLGVGLGMDGRDGYVSNVTVQDCAGAGMLAHTFNRTFSNITVIDCNYMNFDSDQIIIIGDCIVNGIRAAGIKPQPSKGMVISAPNSTLSGVVGNVPIDRILAGNIIDSALGQTRINGFNGDSVEMGLRVHKLTKTLDSGAIRSTLNGGPGSGSAWTEITAISGSLPDAVSLKINRGDYHAVEIPVAVTVLPDAAVRDNGSISLYLDGDSLKALVKRADGSYTRLTLA
Physico‐chemical
properties
protein length:684 AA
molecular weight: 72387,48440 Da
isoelectric point:5,08114
aromaticity:0,07749
hydropathy:-0,10249

Domains

Domains [InterPro]
G3DSA:2.10.10.80
ATT
69–128
G3DSA:2.10.10.80 IPR012332
G3DSA:2.10.10.80
ATT
69–130
G3DSA:2.10.10.80 IPR015331
IPR040775
RBD
71–131
IPR040775 IPR011050
IPR015331
RBD
138–684
IPR015331
UJP30002.1
1 684
Architecture
ATT
STR
ATT 69-130 | STR 131-684
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
UJP30002.1
1 684
Domain Start End Length (AA) Confidence
N-terminal 1 155 155 0,9945
Central domain 156 597 443 0,9837
C-terminal 598 684 86 0,8809
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-155
Central
156-597
C-terminal
598-684

Taxonomy

  Name Taxonomy ID Lineage
Phage Salmonella phage CKT1
[NCBI] 		2877937 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Salmonella pullorum
[NCBI] 		605 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
UJP30002.1 [NCBI]
Genbank nucleotide accession
OK143508.1 [NCBI]
CDS location
range 12045 -> 14099
strand -
CDS
ATGTCTAGTGGTTGCGGTGATGTATTGTCACTTAACGATTTACAGGTAGCTAAAAAACACCAGATTTTCGAAGCCGAGGTGATCACCGGCAAACAGGGTGGTGTAGCGGGTGGCGCAGATATCGACTACGCTACTAACCAGGTAACCGGGCAGACGCAGAAGACGCTGCCCGCGGTCTTGCGTGACGCCGGTTTCTCTCCGGCGTCTTTTAACTTCACAACCGGCGGAACCCTGGGAATTAACGACGCCAATAAAGCGGTTCTTTGGCCGAAAGAAGATGGCGGGGACGGTAACTATTACGCATGGCGTGGCTCCCTGCCGAAAGTTATCCCCGCGGCGTCTACCCCTCTAACAACCGGTGGCATTTCTGATTCTGCTTGGGACGCGTTCGGAGATATCACCTTCCGTGCCGAAGCGGATAAGAAATTTAAATACTCCGTTAAACTGTCTGACTTCACTACTCTACAGCAACTAGCCGATGCCGCTGTTGACAGCGTTCTTATCGACCGCGATTACACCTTTACCAATGGTGAAACTGTTAACTTCGGAGGGAAAGTCTTAACCATTGACTGTAAAGCTAAGTTTATTGGTGATGGGGCTTTGATTTTCACTAATATGGCTAGTGGTTCTATAATAGAAAAGCCTTTCATGGAGAGCGCTACGACCCCGTGGGTTATTTACCCCTGGACAGAAGATGGGAAGTGGATTACAGATGCACAAGCTGTCGCTGCTACACTTAAACAATCTAAGACTGAGGGGTATCAACCGGGAGTTAATGATTGGGTCAAGTTCCCTGGTCTTGAGGCATTGATACCACAGAATGTAAAAGACCAGCATATAGCGTCCACGCTGGATATCCGTGAGTGTGTAGGTATTGAGGTCAGAAGTGCTGGTGGACTTATGGCTGCTTACTTGTTCCGCAACTGTCATCATTGTAAGGTGATTGATTCTGACACCATCATTGGTGGTAAAGAAGGCATCATCACCTTTGAAAACTTAAGTGGTGAGTGGGGCATCGGCAACTATGCCATAGGTGGCCGTGTGCATTATGGCTCAGGTAGTGGTGTGCAGTTCCTTCGAAACAACGGAGGTGCGTCGCACAATGGTGGGGTTATTGGTGTGACGTCATGGCGTGCAGGTGAGTCTGGGTTTAAAACATGGCAAGGCTCTGTAGGTGCCGGTACAGCTCGCAACTATAACCTTCAGTTCCGTGACTCAGTTGCATTATCTCCAGTGTGGGACGGCTTTGACTTAGGCTCAGACCCGGGAATGGCGCCGGAAGACGATAGACCGGGAGATTTACCGGTATCTCAATATCCTATGCATCAGCTACCTAATAACCACATGGTTGATAACATCCTTGTTATGAACTCATTAGGTGTAGGTTTAGGCATGGATGGTCGTGATGGTTATGTGTCGAATGTTACCGTGCAGGATTGTGCAGGCGCTGGTATGCTTGCTCACACATTCAACCGTACCTTCTCTAACATTACGGTGATTGACTGCAACTATATGAACTTTGATTCAGACCAGATAATCATCATTGGTGACTGTATTGTAAATGGCATCCGAGCCGCAGGCATTAAGCCTCAGCCATCCAAAGGTATGGTCATCAGCGCACCTAACTCGACCCTAAGTGGTGTTGTAGGTAACGTGCCAATAGACCGTATTCTTGCTGGTAACATTATTGACTCTGCGTTAGGACAGACAAGGATTAATGGGTTTAATGGTGACTCGGTGGAAATGGGTTTAAGAGTCCACAAGCTTACCAAAACCTTGGATAGTGGTGCTATTCGCTCTACGCTGAATGGGGGCCCCGGTTCTGGTTCCGCTTGGACTGAAATTACGGCTATATCTGGGTCATTACCGGATGCAGTATCGCTAAAAATTAACCGCGGCGACTATCACGCGGTAGAAATACCAGTAGCAGTAACAGTTTTACCTGATGCCGCTGTTCGAGATAACGGGTCTATATCCCTGTATCTGGATGGGGATAGCCTTAAGGCATTGGTTAAGCGGGCGGACGGAAGTTATACAAGATTAACTTTGGCATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
e028307b188f8df4a982df1a0b0c979ca162312c3ea3feecb62b89534731bb6d
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,6933
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Salmonella phage CKT1 significantly relieves the body weight loss of chicks by normalizing the abnormal intestinal microbiome caused by hypervirulent Salmonella Pullorum Huang,J., Liang,L., Cui,K., Li,P., Hao,G. and Sun,S. 2022 35063807 GenBank