Protein

View in Explore
Genbank accession
YP_010355792.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence GenBank
Probability 1,00
TF
Evidence Phold
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,91
TSP
Evidence RBPdetect2
Probability 0,83
Protein sequence
MAIVFPASPSVNDTFTEGSITYKWDGAKWIGLGVTPADRLVEGSNKLEIDGSNNLVWTGDNVGIGTDNPGEKLVVQGPVVCKGTLSAGQTSAGVLDFSGNDLRIRCYGATTGSGAFSIRTGGGAGNADTEALRITSDGRLITKEDISIEGTGDKTLSIYCEDTGVQATPKTFINLYGENTANEKKLQAQIASAPGAVASSAGELHFSTNNSSSVITRRMTINQDGNVGVGLVAPRVPLEINATHDTTAGNLTPVLRLSTGNSYTGLNTGSALEFGTTNTLYPTWVKGRIGAVYDNVTSFGGEIVFHTNNGSSQTDLSEKMRITAGGEIGTQLKITMRENLTDAFSLDSNGANGYFRIVDEYDTFERLRIHGDGTFSLNTTGASNYDQTDNTRNLDTTSSSVGGNFAFRRDKGTMIIANDANTGWSLMYINKFNWVSGDDNRWAAFYLNGSPKDTIIWNGSNVIFGGASDYRIKKNVRDFTSGIDKVKQLKVHIFDYIETDRGNNHVGFIAHELQEVIPEAVGGVKDGMRKDEQTGEDVMDVQMVEAGKVTPVLTAALQEAIAEIETLKARLDAAGL
Physico‐chemical
properties
protein length:576 AA
molecular weight: 61555,54050 Da
isoelectric point:4,90176
aromaticity:0,07465
hydropathy:-0,30503

Domains

Domains [InterPro]
DC_1386
STR
7–148
DC_1386 DC_1367
DC_1815
STR
141–299
DC_1815 IPR030392
IPR030392
CHP
468–521
IPR030392
YP_010355792.1
1 576
Architecture
STR
RBD
STR 7-299 | RBD 300-576
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_010355792.1
1 576
Domain Start End Length (AA) Confidence
N-terminal 1 62 62 0,3301
Central domain 63 261 200 0,0668
C-terminal 262 576 314 0,9593
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-62
Central
63-261
C-terminal
262-576

Taxonomy

  Name Taxonomy ID Lineage
Phage Synechococcus phage ACG-2014e
[NCBI] 		1493510 Uroviricota > Caudoviricetes > Pantevenvirales > Chalconvirus > Chalconvirus acg2014e
Host Synechococcus sp. WH 7803
[NCBI] 		32051 Bacteria > Cyanobacteria > Oscillatoriophycideae > Chroococcales > Synechococcus >

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_010355792.1 [NCBI]
Genbank nucleotide accession
NC_062736.1 [NCBI]
CDS location
range 170445 -> 172175
strand +
CDS
ATGGCAATTGTATTTCCAGCAAGTCCTAGTGTAAATGATACTTTTACAGAAGGATCTATCACATACAAATGGGATGGTGCTAAGTGGATTGGACTGGGTGTTACTCCTGCTGATAGATTAGTTGAAGGTAGTAATAAGTTAGAGATTGATGGTAGTAATAATCTAGTTTGGACTGGTGATAATGTTGGTATCGGGACTGATAATCCAGGCGAAAAACTTGTAGTTCAAGGTCCAGTTGTTTGTAAGGGAACCTTAAGTGCTGGTCAAACTTCTGCTGGAGTATTGGATTTTAGTGGAAATGATTTACGAATACGATGTTATGGAGCAACTACAGGATCTGGTGCATTTTCGATAAGAACTGGTGGCGGCGCGGGAAATGCTGATACAGAAGCACTTCGTATAACTTCTGATGGGCGACTCATCACAAAGGAAGACATATCAATAGAAGGAACTGGAGATAAGACTCTCTCTATTTATTGTGAGGATACAGGTGTACAAGCAACACCAAAAACATTTATAAACCTTTATGGCGAAAATACTGCAAACGAAAAAAAATTACAAGCTCAGATAGCGTCAGCTCCTGGAGCAGTTGCATCAAGTGCAGGGGAGTTGCATTTTTCAACAAATAACTCCAGCTCAGTCATTACTAGGAGAATGACTATTAACCAAGATGGTAATGTTGGTGTCGGATTGGTTGCTCCAAGGGTGCCCTTAGAAATTAATGCAACTCATGATACTACGGCTGGTAACCTCACACCTGTTTTAAGACTTTCTACAGGAAACTCTTATACTGGACTTAATACTGGTTCTGCTCTAGAGTTTGGAACTACAAATACCTTATATCCAACTTGGGTAAAAGGTAGAATTGGTGCTGTTTATGATAATGTCACTAGTTTTGGTGGAGAGATAGTATTTCATACAAATAATGGATCCTCTCAGACAGATCTGTCTGAGAAGATGCGTATAACTGCCGGTGGTGAAATTGGAACTCAATTGAAGATCACAATGAGAGAAAACCTCACTGATGCTTTCTCTCTTGATAGTAATGGAGCAAATGGATATTTTAGAATAGTAGATGAATATGATACGTTTGAAAGACTTCGTATACATGGAGATGGAACATTCAGTCTAAACACAACTGGTGCGTCTAACTACGACCAAACAGATAACACTCGTAATCTTGATACTACTAGTAGTAGTGTTGGCGGCAATTTTGCTTTCAGACGAGATAAAGGAACCATGATTATTGCCAACGATGCTAATACTGGTTGGTCATTGATGTATATTAATAAGTTTAATTGGGTTAGTGGTGATGATAATAGGTGGGCCGCCTTCTATCTAAATGGTTCTCCTAAAGATACTATTATTTGGAATGGTAGTAATGTTATCTTTGGTGGTGCCTCAGATTATAGAATTAAGAAAAATGTTAGAGATTTTACTAGTGGTATTGATAAGGTAAAACAACTTAAGGTTCATATATTTGATTACATTGAAACTGATAGAGGTAATAACCATGTTGGATTTATTGCTCATGAATTACAGGAAGTAATTCCAGAAGCAGTTGGTGGTGTAAAAGACGGAATGAGAAAAGATGAACAAACGGGTGAGGATGTGATGGATGTTCAAATGGTTGAGGCTGGAAAAGTAACACCAGTTCTTACAGCAGCACTTCAAGAAGCGATTGCTGAAATTGAAACACTGAAAGCAAGACTAGATGCTGCTGGTCTTTGA

Genome Context

Genome Context

Tertiary structure

PDB ID
e31b4f18cbd0c8b5f783d40fdd2f9704cb22f0aaf15d37f972ee3ec3fd634757
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7302
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Ecological redundancy of diverse viral populations within a natural community Gregory,A.C., LaButti,K., Copeland,A., Woyke,T. and Sullivan,M.B. 2015-03-20 — GenBank