Protein

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Genbank accession
AQT25210.1 [GenBank]
Protein name
hypothetical protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
Protein sequence
MGLYMKGSPGTVLHLTESSDARNGVGNDTIFHSSLPHVFITDEWAIPLTNFDASAVGDTYGGWNILGRYKVGSLPAGAINAIKNSSTVTLIEVFYTVNGKEYSKVINGHSITSSFDTGDAWDDWDGRMDFHDYDLHVTMRPGIGVHVGFFVGNKSTDIRQATLDQDSFGINTMRIGGDSEANSFNVARDRLWRCGYNNSFVTIDTSKFYRVGFYGGTYSGILVPPFNNLIGAPRGALANASQKFEKDMQHYSDRDRYANWWLNHRKLGTISGTTKWHGNRNASYMELWDYPTVTFTKIIIRKLNLTYNVNSGYSLTNIVPLTGEIKLDRNDFKVGGVSIKTLAAKMLHQINPSTTGSGYTYMYANPSYDGNGLPNMRSAMPLLGVASDSSINTTSGSSMVSLAPNQHNFLGIQDMKNSGNGWVITPDSIGTQTRTIWGKGGSMALKLLPGATKRVTFGGSEVTLANPESKVIATVALGLATNRASTIIMNLNTTDVRVWLPNEAYYARVGGGIMKLSSNTVPNVGGDHSILVLPINKYVQFMEVKSYKSDSGWADFSDPVVNTWLTNIAFWFRNLGNGNVEISVSHRGAPMPGKKGGNGQSLNANPKFHVPAYTMSIAALS
Physico‐chemical
properties
protein length:621 AA
molecular weight: 67724,50300 Da
isoelectric point:9,05151
aromaticity:0,10306
hydropathy:-0,24815

Domains

Domains [InterPro]
IPR059609
RBD
1–621
IPR059609
AQT25210.1
1 621
Architecture
RBD
RBD 1-621
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
AQT25210.1
1 621
Domain Start End Length (AA) Confidence
N-terminal 1 10 10 0,0069
Central domain 11 237 228 0,8318
C-terminal 238 621 383 0,7657
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-10
Central
11-237
C-terminal
238-621

Taxonomy

  Name Taxonomy ID Lineage
Phage Providencia phage vB_PreS_PR1
[NCBI] 		1931407 Uroviricota > Caudoviricetes > Demerecviridae > Priunavirus PR1 >
Host Providencia sp.
[NCBI] 		589 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
AQT25210.1 [NCBI]
Genbank nucleotide accession
KY363465 [NCBI]
CDS location
range 104746 -> 106611
strand -
CDS
ATGGGTCTTTATATGAAAGGAAGTCCGGGGACTGTCCTGCACTTAACAGAGTCCAGTGACGCACGCAATGGGGTTGGTAATGATACTATCTTTCACTCCTCATTGCCACATGTGTTTATAACTGATGAGTGGGCTATCCCATTAACTAATTTCGATGCTTCCGCTGTGGGAGATACATACGGTGGTTGGAATATTCTTGGCAGATATAAGGTAGGGTCACTACCTGCGGGTGCTATAAATGCTATTAAAAATAGTTCTACTGTTACACTTATTGAAGTATTCTACACAGTAAACGGTAAGGAATACTCTAAAGTAATTAATGGCCATAGTATAACCTCCTCGTTTGATACGGGGGATGCCTGGGATGACTGGGATGGGCGTATGGACTTCCATGACTACGATTTACATGTAACAATGCGCCCAGGGATAGGTGTACATGTAGGTTTCTTTGTGGGCAATAAATCTACTGATATTAGACAAGCCACCCTTGATCAAGATTCTTTTGGTATCAATACTATGAGAATTGGTGGTGATAGTGAGGCTAACAGTTTCAATGTTGCTAGGGATAGATTATGGAGGTGCGGGTATAATAACTCATTTGTAACCATTGACACCAGTAAGTTCTATCGTGTAGGATTTTATGGGGGGACTTACTCAGGGATTCTGGTACCTCCATTTAACAATTTAATAGGAGCCCCCCGAGGGGCTTTAGCTAACGCTTCACAGAAATTCGAAAAGGATATGCAGCATTATAGTGACCGCGATAGGTACGCTAACTGGTGGTTAAATCATCGTAAACTAGGTACTATTTCTGGTACTACTAAATGGCATGGAAACCGGAATGCCAGCTATATGGAGTTGTGGGACTACCCTACGGTAACCTTTACCAAGATTATTATCAGAAAGCTGAATCTAACTTATAATGTTAACTCAGGGTATTCTCTGACTAATATAGTCCCTTTAACAGGGGAGATTAAGCTAGATAGGAATGACTTTAAGGTGGGGGGAGTATCTATAAAAACCTTAGCAGCCAAAATGCTGCATCAAATCAATCCTAGTACTACAGGGTCTGGTTATACCTATATGTATGCTAATCCATCATATGATGGTAATGGTCTTCCCAATATGAGGTCTGCAATGCCCTTATTGGGGGTAGCTTCAGATAGTAGTATTAATACTACCTCGGGGTCCTCCATGGTAAGTCTAGCACCAAACCAACATAACTTCCTTGGTATTCAAGATATGAAAAATTCCGGAAATGGGTGGGTAATTACCCCCGACTCTATAGGAACTCAAACTCGGACGATATGGGGGAAAGGTGGGTCTATGGCGCTTAAACTACTTCCTGGGGCAACCAAAAGAGTTACTTTCGGGGGGTCTGAGGTAACATTGGCAAACCCTGAAAGTAAGGTTATTGCTACAGTAGCTCTAGGGCTAGCTACTAATAGGGCCTCTACAATTATAATGAATCTTAACACAACAGATGTCCGTGTATGGCTACCTAACGAAGCATATTATGCCAGAGTAGGGGGAGGTATTATGAAACTTTCCAGCAACACTGTTCCTAATGTGGGGGGAGATCATAGTATTCTTGTCTTGCCTATAAATAAGTATGTACAGTTTATGGAAGTAAAATCATACAAGAGCGATAGTGGTTGGGCTGACTTCTCTGATCCAGTGGTAAATACTTGGCTTACAAATATCGCATTCTGGTTCAGAAATTTAGGTAATGGTAATGTGGAGATATCAGTATCTCACAGAGGTGCCCCGATGCCTGGTAAGAAAGGCGGTAATGGTCAGTCTCTTAATGCTAATCCCAAGTTTCACGTACCAGCGTACACTATGAGCATTGCTGCTCTTTCGTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
dc80dc58088c5fa95918be6195c1f8b91b125cba124e5bcc6547d2fc2f4c6758
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,2483
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Providencia rettgeri phage vB-PreS_PR1 - a deep-branching member of the T5-like siphoviruses Oliveira,H., Pinto,G., Hendrix,H., Noben,J.-P., Gawor,J., Lobocka,M., Lavigne,R. and Azeredo,J. 2017-12 — GenBank