Protein

View in Explore
Genbank accession
YP_011651564.1 [GenBank]
Protein name
tail fiber
RBP type
TF
Evidence UniProt/TrEMBL
Probability 1,00
TF
Evidence GenBank
Probability 1,00
TF
Evidence Phold
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,85
Protein sequence
MKKILDSAREYLRTNNKIKTACLITLELPSSTGSSSAYIYLTDYFRDVIYNGILYTSGKVKSITTHKQNRKLSIGSLSFTITGTAEDEVLKLVQNGVSFLDRSISIHQAVIDEEGNILPVDPDTNGPLLYFRGKITGGGIKDNIGTSGVSTSVITWNCSNQFYDFDRVNGRFTDDADHRGLEIVAGQLVPSNGAKRPEYQEDYGFFHANKSISILAKYQVQEERYKLQSKKKLFGLSRSYSLKKYYETVTKEVDLDFNLAAKFLPVVYGVQKIPGIPVFADTELHNPNIVYVVYAFCEGEIDGFLDFYFGDVPMICIDPNDSKSRTCFGTKKVAGDTMQRIASGQPSSEPSVHGQEYKYNDGNGDIRIWTYHGKADQSAADVLVNIAKEKGFYLQNMNENGPEYWDSRYKLLDTAYAIVRFTINENRTEIPEVSAEVQGKKIKIYHSDGRVTADKTSLNGIWQTLDYLTSDRYGANITIDQFPLQQLIQEAAILDIIDESYQVSWQPYWRYVGWTDAVGENRQIVQMNTILDTSESVFKNVQGLIESYGGAINNLSGQYRITVEKFSNTPLEIDFLDTYGDLELSDTTGRNKFNSVQASILDPALSWKTNSITFFNSIFKEQDKGLDKKLQLSFANITNYYTARSFADRELKKSRYSRTLTFSLPYHFIGIEPNDPIAFTYGRYGWDKKYFLVDEVENSREGKINITLQEYGEDVFINYEQVDNSGNDIPDVSNNVLPPRDFMYTPTPGGQVGSIGKNGELSWLPSLTNNVVYYSIVHSGHADPYIVQQLETNPNLRMIQEIIGEPAGLAVFEIRAVDINGRRSSPVTLSVELNSAKNLSVVSNFRVTNTASGDASEFVGPDVKLAWDRIPEEDIIDGIFYTLEIYDNLDRLLRSVRIEDQYVYDYLLIYNKADYALHNEDALGINRKLRFRIRAEGDNGEQSVDWASI
Physico‐chemical
properties
protein length:949 AA
molecular weight: 107264,73730 Da
isoelectric point:5,03283
aromaticity:0,11380
hydropathy:-0,40348

Domains

Domains [InterPro]
DC_0187
STR
229–948
DC_0187
IPR032876
ATT
594–686
IPR032876
YP_011651564.1
1 949
Architecture
STR
ATT
STR
STR 229-593 | ATT 594-686 | STR 687-948 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_011651564.1
1 949
Domain Start End Length (AA) Confidence
N-terminal 1 312 312 0,9481
Central domain 313 525 214 0,2993
C-terminal 526 949 423 0,0053
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-312
Central
313-525
C-terminal
526-949

Taxonomy

  Name Taxonomy ID Lineage
Phage Salmonella phage vB_SenS_SB10
[NCBI] 		2591134 Uroviricota > Caudoviricetes > Demerecviridae > Epseptimavirus > Epseptimavirus SB10
Host Salmonella enterica subsp. enterica
[NCBI] 		59201 Bacteria > Proteobacteria > Gammaproteobacteria > Enterobacteriales > Enterobacteriaceae > Salmonella

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_011651564.1 [NCBI]
Genbank nucleotide accession
NC_101270.1 [NCBI]
CDS location
range 15557 -> 18406
strand +
CDS
ATGAAGAAAATTCTTGACAGTGCAAGAGAGTATCTAAGAACCAATAATAAAATAAAAACTGCATGCCTTATTACTCTTGAATTGCCAAGCTCTACCGGATCAAGTTCTGCGTACATTTATCTTACAGACTATTTTAGGGATGTAATTTATAATGGTATTCTTTACACATCCGGTAAAGTTAAGTCTATAACAACACATAAACAAAATAGAAAACTTTCCATTGGTAGCCTTTCTTTTACTATCACAGGTACTGCTGAGGATGAAGTATTAAAACTAGTCCAAAATGGTGTATCCTTCCTAGATAGATCTATTTCAATCCATCAAGCAGTTATTGATGAAGAGGGTAACATTCTTCCTGTAGATCCAGACACTAATGGTCCTTTACTTTACTTCCGTGGTAAAATTACTGGTGGTGGTATTAAGGATAACATTGGTACTTCTGGAGTTAGTACATCCGTTATTACATGGAACTGTTCAAACCAATTCTATGACTTTGATAGAGTAAATGGACGTTTCACAGATGATGCTGACCATAGAGGGCTTGAGATTGTTGCCGGCCAATTAGTTCCGTCTAATGGTGCTAAGCGACCTGAATATCAAGAAGACTACGGGTTCTTCCACGCTAACAAGAGTATCTCTATTCTTGCTAAGTATCAGGTTCAGGAAGAACGTTATAAGTTACAATCTAAGAAAAAATTATTTGGTCTTTCTAGAAGCTATAGTCTAAAGAAATATTATGAGACTGTAACTAAGGAAGTAGATCTTGATTTTAACTTAGCTGCTAAATTCCTGCCAGTAGTATATGGAGTTCAGAAAATTCCTGGAATCCCAGTATTTGCAGATACTGAACTGCATAATCCTAATATCGTATATGTAGTATACGCTTTCTGTGAGGGTGAGATTGATGGGTTCCTAGATTTTTACTTTGGTGATGTACCAATGATCTGTATTGATCCTAATGATAGTAAGTCTCGTACTTGCTTTGGTACTAAGAAAGTAGCTGGTGATACCATGCAACGTATTGCTTCTGGTCAACCAAGCTCTGAACCTTCTGTTCATGGACAGGAATATAAGTATAATGATGGTAATGGCGATATCCGTATCTGGACTTATCATGGTAAGGCTGATCAATCTGCTGCTGATGTTCTAGTTAACATTGCAAAAGAGAAAGGTTTCTATCTACAGAACATGAATGAGAATGGACCGGAATACTGGGACTCTCGTTATAAACTGTTAGATACTGCTTATGCTATTGTTCGCTTTACTATTAATGAAAACAGAACAGAAATTCCAGAAGTTAGCGCTGAAGTTCAAGGTAAGAAGATTAAGATCTATCATTCAGATGGTAGAGTAACTGCTGATAAGACTAGCTTAAATGGTATCTGGCAAACTCTGGACTACCTAACCTCTGACCGCTACGGTGCTAATATCACTATTGATCAGTTCCCTCTCCAGCAACTTATTCAAGAAGCAGCTATCCTGGATATCATTGATGAATCCTATCAGGTTTCTTGGCAACCCTACTGGAGATACGTTGGATGGACTGATGCTGTAGGAGAGAATAGACAAATAGTTCAAATGAATACTATTCTCGATACCTCTGAGTCAGTATTTAAAAACGTGCAGGGATTAATAGAGTCTTATGGAGGTGCTATCAACAACTTATCTGGTCAGTATAGAATAACTGTTGAGAAGTTCTCGAATACTCCACTGGAGATTGACTTCTTAGATACCTATGGTGATCTGGAGCTATCAGATACTACTGGTAGAAATAAGTTTAACTCAGTACAGGCCTCTATACTAGATCCCGCATTAAGCTGGAAAACTAACTCCATTACATTCTTTAACTCTATATTTAAGGAGCAAGATAAAGGGTTAGATAAAAAACTTCAGCTTTCTTTTGCAAACATCACTAACTACTATACTGCGCGTAGCTTTGCAGATAGAGAACTGAAAAAGTCTCGTTACTCACGAACTCTCACATTCTCATTACCATATCATTTCATAGGCATTGAGCCTAACGATCCGATTGCTTTTACATACGGTCGTTATGGTTGGGACAAGAAATACTTCCTAGTTGATGAAGTTGAAAACTCTAGAGAAGGTAAGATTAATATTACACTGCAAGAGTACGGTGAGGATGTATTCATTAACTACGAGCAGGTTGATAATAGTGGTAACGATATCCCTGATGTTAGTAATAACGTACTGCCTCCTAGAGACTTTATGTATACACCAACACCGGGTGGACAAGTAGGATCTATTGGTAAGAATGGTGAGCTATCTTGGCTTCCTAGCTTAACTAATAACGTTGTTTATTACTCCATCGTTCACTCTGGGCATGCTGATCCTTATATAGTACAGCAACTAGAAACTAATCCAAATCTACGAATGATCCAAGAAATTATTGGAGAACCTGCTGGTTTAGCAGTCTTTGAGATTAGAGCTGTAGATATTAATGGTAGACGAAGTTCTCCTGTAACATTATCGGTAGAACTTAACTCTGCTAAAAACTTAAGCGTCGTTAGTAATTTCAGGGTTACTAACACAGCTTCAGGAGATGCATCGGAGTTTGTAGGACCAGACGTTAAGTTGGCCTGGGATAGAATTCCAGAAGAAGATATTATTGATGGAATCTTCTACACTCTCGAAATCTACGATAACCTAGATCGTTTATTAAGAAGTGTACGAATTGAAGATCAGTATGTCTACGATTATCTACTGATATACAATAAGGCAGACTATGCTCTTCATAACGAGGATGCTCTAGGTATTAATAGGAAGTTACGCTTCCGTATAAGAGCAGAAGGTGATAATGGCGAGCAATCTGTGGATTGGGCATCTATTTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
0fca1ee71de50d6453de780d1f777b6909d7617233b2dbaff031fce77496a571
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,8202
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Whole genome sequence analysis of broad host range Salmonella enterica bacteriophages Bhandare,S.G., Colavecchio,A., Emond-Rheault,J.-G., Hamel,J., Kukavica-Ibrulj,I., Boyle,B., Levesque,R.C. and Goodridge,L. 2024-03-29 — GenBank