Protein

View in Explore
Genbank accession
WPK37766.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence GenBank
Probability 1,00
TF
Evidence RBPdetect
Probability 0,90
TF
Evidence RBPdetect2
Probability 0,89
Protein sequence
MSIASAGVAGVVYGRTLVSQKTGNKIDFDDIMNGGSGEITVESITDASDIGKEILKAADQDAVKTIINVQDGATGPQGIQGIPGTQGPQGPRGVQGPEGPQGEEGPAGPTGPQGPQGPTGPQGPTGPSGATGLEFKGNYSSTTTYVENDAAVYNGALYFNTLTSTGVPPTGDPASATHWALMAAQGATGPVGPTGPAGPQGPSGPQGPEGPKGDDGEPGTPAESRIRRKVEVTWTNLTDVTIGPETNLITLLKNIPHSGSLSPLFNTTVDKMIVYNSNFSVYFKLNLIGTWSSSSSNRAIELNFPPSVGNRLTAARVQGTSQQDTINLLNMFSVDVNGNMATNGTQCLISAVGSTFIPSTILLIAEQVVPESATQLPAI
Physico‐chemical
properties
protein length:379 AA
molecular weight: 38698,49850 Da
isoelectric point:4,54646
aromaticity:0,05013
hydropathy:-0,26438

Domains

Domains [InterPro]
DC_0791
STR
2–184
DC_0791 DC_1780
IPR050149
Unmapped
72–221
IPR050149 IPR032395
IPR008160
STR
75–132
IPR008160 IPR038681
WPK37766.1
1 379
Architecture
STR
STR
STR 2-184 | STR 215-368 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Taxonomy

  Name Taxonomy ID Lineage
Phage Escherichia phage AV124
[NCBI] 		3077269 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Escherichia coli
[NCBI] 		562 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
WPK37766.1 [NCBI]
Genbank nucleotide accession
OR352954.1 [NCBI]
CDS location
range 121477 -> 122616
strand -
CDS
ATGTCAATAGCTTCGGCTGGCGTAGCTGGTGTTGTTTATGGAAGAACACTTGTTAGTCAGAAGACTGGTAATAAGATCGATTTTGATGATATCATGAATGGCGGGTCAGGTGAGATTACTGTTGAATCTATCACCGATGCGTCTGATATTGGTAAAGAGATATTAAAAGCAGCTGACCAAGATGCTGTAAAAACGATTATAAATGTGCAGGATGGGGCTACAGGTCCTCAGGGAATCCAAGGAATACCTGGAACCCAAGGCCCGCAGGGACCTCGTGGAGTTCAAGGCCCGGAAGGGCCTCAAGGTGAAGAAGGACCAGCAGGACCAACTGGCCCTCAAGGGCCTCAAGGCCCAACGGGGCCACAGGGACCTACGGGACCTTCTGGGGCTACGGGTCTAGAGTTTAAAGGTAACTATTCCTCAACGACAACATATGTTGAGAACGATGCTGCTGTTTACAACGGGGCATTGTATTTCAACACACTGACGTCAACTGGAGTGCCTCCTACTGGAGACCCGGCTTCTGCCACACACTGGGCATTAATGGCAGCACAAGGTGCTACAGGCCCGGTCGGGCCTACAGGGCCTGCTGGTCCACAAGGCCCATCTGGACCTCAGGGTCCAGAGGGACCAAAAGGTGATGATGGTGAGCCAGGAACCCCTGCGGAATCTCGTATAAGAAGAAAGGTGGAAGTTACTTGGACAAATCTTACAGATGTAACGATAGGTCCAGAAACAAATCTTATCACTCTTCTGAAGAATATACCCCATTCCGGTAGTTTATCTCCGCTCTTCAATACCACCGTCGATAAGATGATTGTATACAACTCAAACTTTAGCGTTTACTTTAAGCTGAATTTGATTGGAACTTGGTCGAGTAGTTCAAGTAACCGTGCGATAGAATTAAATTTCCCACCTTCAGTCGGTAACAGACTAACGGCAGCTCGTGTACAAGGTACATCTCAACAGGATACAATTAACTTACTCAATATGTTCAGCGTGGATGTTAATGGCAATATGGCGACAAACGGGACTCAGTGTTTGATTTCCGCTGTTGGATCAACATTCATCCCTTCAACTATTTTGTTAATCGCAGAACAGGTTGTACCTGAATCTGCAACACAATTACCCGCAATCTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
29c0f8308af790fd3de91b709ffc75ca390320b5e376c4c8dce3debb772460fd
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,5612
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
A collection of diverse bacteriophages for biocontrol of ESBL- and AmpC-beta-lactamase-producing E. coli Vitt,A.R., Sorensen,A.N., Bojer,M.S., Bortolaia,V., Sorensen,M.C.H. and Brondsted,L. 2023 — GenBank