Protein

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Genbank accession
YP_006383334.1 [GenBank]
Protein name
hypothetical protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,88
Protein sequence
MNDLTNEVSKVLEAATLQTEASRKLTDDIDAKINDIDAKTQEVMGTIESQRTLVAAEVSATVTETITAETNRVVSAADAAALNAGIFQTTTLGLAGTTEGDYFSTPSTTDIEYLILYRHDAGSVATEIKRYPSTDGVLTPENVGGKINCTALAMGYPGTLVMNIKDKTLELTRGLVVLTTSEITVNVPAQVIDFSLIPDSQLGYALYVYLREGSTTINVGTFNSNKPYHKDIVLGVVFYDVAHGPNANIFSITDKYGNRLGTVGARTNPTASYGYSGHLVECNWVTRTLKFTGTVNVMSNGQNVGLPSLTLNFDDYDTVTADDTYLVLTYSRLATNAVNRTESTLRLYSWASLGTTSQIIPASESIVAIFTDGGQVWSNFQLPPINISSRSNNPKGLNTNGSTFETRHSHLLTPDRIIVDLHTKKLTVLTNCYLSAEPNDLTAHKGYKYINSGTVDFSDNDLSVFQTLWYDYRTNKLHVTPATEIISPAYGLIFGTITDGDFIWLGNSKHKPTVIDTEGNVIDYLNGEVTSGLEFDAYENRLLMPDNLFFVEGEELPIFRNSIIANDKPDELDNLNIFITPSTNAKLTRNVRPYQTLDGELYFKPEDLGADGEVASIRMTHILEPDNRYNTPFTIHSVDKTLVSGKVKKALLIGDSLTEVGMASDFKNKMSTKYNCTMEIVGTYASSYTDNIASEGRGYWQYRSFIGKCNRTGATHTLPEPGTTTTSKWQNPFLRLATASDRLNTPELCFTFTGSIKEVSFAEDNSADKYYIFDFAHYLSTHNVDVPDIVTIALSTNDINLQRDSYTADERLEFMELALRHMIGSIRAVSTNIDIGVIPAPVTSHTTNGLVRWGEETTIWIDKCHQVCTDLAVDFIPCYLHVPRDYSNAWNSNVSVPNTMMNKATVTDWVHFDEFGRDMYCNATTAWAVNKLS
Physico‐chemical
properties
protein length:933 AA
molecular weight: 103069,22810 Da
isoelectric point:4,91176
aromaticity:0,09218
hydropathy:-0,22058

Domains

Domains [InterPro]
DC_1164
ATT
34–135
DC_1164 SSF52266
IPR036514
STR
639–926
IPR036514
YP_006383334.1
1 933
Architecture
ATT
STR
ATT 34-135 | STR 630-926 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_006383334.1
1 933
Domain Start End Length (AA) Confidence
N-terminal 1 532 532 0,4517
Central domain 533 731 200 0,4489
C-terminal 732 933 201 0,8625
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-532
Central
533-731
C-terminal
732-933

Taxonomy

  Name Taxonomy ID Lineage
Phage Halocynthia phage JM-2012
[NCBI] 		1173297 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Halocynthia roretzi
[NCBI] 		7729 Eukaryota > Metazoa > Chordata > Tunicata > Ascidiacea > Stolidobranchia

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_006383334.1 [NCBI]
Genbank nucleotide accession
NC_017975 [NCBI]
CDS location
range 53169 -> 55970
strand -
CDS
ATGAACGATTTAACCAATGAAGTATCTAAGGTTCTGGAAGCGGCTACGCTCCAAACTGAGGCGAGTCGTAAACTTACCGATGATATAGATGCTAAAATTAATGATATAGATGCTAAAACCCAAGAGGTTATGGGTACTATAGAATCTCAACGTACTTTGGTGGCGGCTGAAGTTAGTGCTACGGTTACAGAAACCATTACAGCTGAAACCAATAGAGTGGTATCGGCGGCAGATGCAGCAGCTCTTAATGCTGGTATCTTCCAAACGACTACATTAGGTCTAGCTGGAACTACTGAAGGGGATTATTTTTCTACTCCAAGTACGACAGATATAGAATATTTAATTTTATACCGTCATGATGCTGGTTCAGTAGCAACTGAAATTAAACGTTACCCTTCTACTGATGGTGTGTTAACTCCTGAAAACGTAGGCGGTAAAATAAACTGTACCGCTTTAGCGATGGGTTATCCAGGTACGTTAGTTATGAACATTAAAGATAAAACTCTAGAATTAACTAGAGGACTTGTCGTCTTAACTACTAGCGAGATAACCGTTAATGTTCCAGCTCAAGTTATTGATTTTAGCCTTATACCTGATTCACAATTAGGTTACGCCTTATACGTTTACTTAAGAGAGGGTTCAACAACAATTAATGTTGGTACGTTTAACAGTAATAAACCGTATCATAAAGATATAGTATTGGGTGTTGTATTCTATGATGTAGCACATGGTCCTAATGCTAACATATTCTCTATAACTGATAAGTATGGTAATCGTTTAGGTACAGTTGGTGCCCGAACCAATCCAACGGCATCATATGGTTATTCTGGTCATCTGGTAGAATGTAATTGGGTAACACGTACTTTAAAATTCACAGGTACCGTGAACGTAATGAGTAATGGTCAGAATGTCGGTTTACCAAGTCTGACTTTAAACTTTGATGATTACGATACAGTTACCGCCGATGATACTTACTTAGTACTAACTTATAGTCGCTTAGCTACTAATGCTGTAAATAGAACAGAGTCTACGCTGAGGTTGTATAGTTGGGCTTCATTAGGTACTACATCACAAATTATACCTGCATCAGAATCTATAGTTGCAATTTTTACAGATGGCGGGCAAGTATGGTCTAACTTCCAACTTCCACCAATAAATATCTCTAGCAGATCAAATAATCCTAAAGGTTTAAATACTAACGGATCTACTTTTGAAACTAGACATAGTCACTTATTGACTCCAGATCGTATCATTGTGGATTTACACACTAAAAAATTAACCGTTTTAACTAACTGCTATCTTAGTGCGGAGCCAAACGACTTAACAGCACATAAAGGCTATAAGTATATAAACTCTGGTACTGTTGATTTTTCAGATAATGACTTATCTGTGTTTCAAACATTATGGTATGATTATCGTACTAATAAGTTACATGTTACCCCTGCAACAGAAATAATTTCTCCGGCCTACGGATTAATATTTGGTACTATAACAGATGGTGATTTTATATGGTTAGGTAATTCTAAACATAAACCTACAGTTATAGATACCGAGGGTAATGTTATAGATTATCTTAATGGTGAGGTTACTAGCGGACTTGAGTTTGATGCGTACGAGAATAGACTTTTAATGCCTGATAATCTGTTCTTTGTGGAAGGTGAAGAGTTGCCTATTTTCAGAAATAGTATTATTGCCAACGATAAACCTGATGAGTTAGATAATCTTAATATTTTCATAACACCATCAACCAATGCTAAGTTAACTCGTAATGTCAGACCATATCAAACATTAGACGGTGAATTATACTTTAAACCAGAAGACTTAGGGGCAGATGGTGAAGTAGCATCTATTCGTATGACACATATCTTAGAACCAGATAATCGTTACAATACACCATTCACTATCCATTCGGTAGATAAGACTTTAGTTTCCGGCAAAGTTAAGAAGGCATTACTTATAGGAGATAGTCTGACTGAAGTTGGTATGGCTAGCGATTTTAAGAATAAGATGTCTACTAAGTATAACTGTACTATGGAAATTGTTGGTACATACGCAAGTTCTTACACAGATAACATTGCGTCTGAAGGTCGTGGTTACTGGCAGTACCGATCGTTTATTGGGAAGTGTAATAGAACTGGTGCAACCCATACGTTACCTGAACCTGGTACAACTACTACTTCTAAGTGGCAAAACCCATTCTTACGTTTAGCGACTGCATCAGATCGTCTGAATACTCCTGAATTATGCTTTACATTTACAGGTAGTATTAAAGAAGTTAGTTTTGCAGAAGACAATTCAGCAGATAAATATTATATCTTCGACTTTGCACATTATCTAAGTACTCATAATGTGGATGTTCCGGATATAGTTACCATTGCATTATCTACTAATGATATAAATTTACAACGTGACTCTTATACGGCAGATGAGCGTTTAGAATTTATGGAATTGGCACTTAGACATATGATAGGTTCTATTAGAGCGGTATCAACTAATATCGACATTGGTGTTATTCCAGCGCCGGTTACGAGTCATACTACTAATGGATTAGTTCGTTGGGGCGAAGAAACTACTATCTGGATTGATAAGTGTCATCAAGTATGTACCGATCTAGCAGTAGACTTCATACCGTGCTATCTGCATGTACCTAGAGATTACTCTAATGCATGGAATAGTAATGTCTCTGTACCAAATACCATGATGAATAAAGCTACGGTTACAGACTGGGTTCATTTTGATGAATTCGGAAGAGACATGTACTGTAATGCTACTACTGCATGGGCAGTCAATAAGCTTTCTTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
0366624cf7c9614c34172eb87ddaed0657f6387f2753787e2beb5ad0f95a20a5
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,6385
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Bacteriophage from diseased seasquirt, Halocynthia roretzi, showing soft tunic syndrome Mun,J.Y., Jang,H.N., Ha,M.A., Nho,S.W., Cha,I.S., Park,S.B., del Castillo,C.S., Jung,C.Y., Kim,Y.K., Kim,Y.R., Aoki,T.T. and Jung,T.S. 1982-05 — GenBank