Protein

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Genbank accession
YP_009100442.1 [GenBank]
Protein name
tail spike protein
RBP type
TF
Evidence Phold
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,91
TSP
Evidence RBPdetect2
Probability 0,95
Protein sequence
MECGVNYTTEALRENVNGLIDYASGVHVEDMTALRLLEPTEFITNINLVGHTISGVGGGNFYYDTTDTTSPDNNGTVIVTLEGKRWKRSGLDFSLIPATWFGLFDGATESVCSAAVQGIVDWVEANPHYNSDNSKEGWCTTIQFPAGRFPLSEVRIKKFNFIIEGVGSGTYLINENATGRMLHVEEGTSNTLGGFIMRDLHIRNVVLREDGAGEIVYLNLPVRGGMFDVTFTSSAINVGGRSKLGGDMLKTVSPFEFLCEGVTFWGCGIGWDIISGPQSDTFDCQGVVFNECTIGMIGFRGAGGSGNNNFKFSGKFIAQQGGTYVSGGKDAFAITSVVSTSGNLLTVTDATNILSGRAVVVGDDNTAEVAIIKSINVNELTLDRPITKSGGTRVLSGKIGVIVIEMRNPSFEGVQIEGCDIGALLLKGSRNVTFDGYSIIGTAKGVYASSVFRRLNMLNGSGGTSGTMRNGVAYKILTLDDNIESDANKIYMNNIAGEGSGYFDDNLTSLIDNVGGFFPFIQIDSRLTGDTHMGDNSASAIELTNKSYLTFNRTTTGKFSRVRWRTADIDQWFLNHTGSGGDLGFRKSGLSVDSMTLLQSSGDIRCGSGVWSDPLFRVGSVRFWVEGVNVRAKASAPSSAIDGVIVVTL
Physico‐chemical
properties
protein length:649 AA
molecular weight: 69499,30900 Da
isoelectric point:5,03249
aromaticity:0,09091
hydropathy:-0,02265

Domains

Domains [InterPro]
DC_0425
STR
5–390
DC_0425
IPR059934
RBD
28–88
IPR059934
YP_009100442.1
1 649
Architecture
STR
STR 5-390 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_009100442.1
1 649
Domain Start End Length (AA) Confidence
N-terminal 1 111 111 0,9778
Central domain 112 328 218 0,9909
C-terminal 329 649 320 0,4345
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-111
Central
112-328
C-terminal
329-649

Taxonomy

  Name Taxonomy ID Lineage
Phage Shewanella sp. phage 1/4
[NCBI] 		1458859 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Shewanella sp.
[NCBI] 		50422 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Alteromonadales
Host Shewanella sp. 4
[NCBI] 		1386772 Bacteria > Proteobacteria > Gammaproteobacteria > Alteromonadales > Shewanellaceae > Shewanella

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_009100442.1 [NCBI]
Genbank nucleotide accession
NC_025436.1 [NCBI]
CDS location
range 79058 -> 81007
strand +
CDS
ATGGAATGTGGTGTTAACTACACAACAGAAGCACTAAGAGAAAATGTTAATGGGTTGATTGATTATGCAAGTGGTGTACATGTCGAAGACATGACAGCACTTAGGCTGTTAGAACCTACTGAGTTTATAACTAATATAAACTTAGTAGGACATACGATCAGTGGTGTTGGTGGTGGTAACTTTTATTATGACACCACAGATACAACTAGCCCAGATAATAATGGAACTGTAATTGTTACTTTGGAAGGAAAAAGGTGGAAGCGTAGCGGGTTGGATTTTAGCCTCATTCCTGCCACTTGGTTTGGGTTATTTGACGGGGCTACAGAATCGGTATGCTCTGCCGCCGTTCAGGGTATTGTAGATTGGGTTGAAGCTAACCCCCATTACAACTCAGACAATTCAAAGGAAGGGTGGTGTACCACCATACAGTTCCCTGCTGGACGATTTCCCTTGTCTGAGGTTAGAATTAAAAAGTTTAACTTTATAATCGAGGGTGTTGGGTCGGGTACTTATCTTATTAACGAAAACGCTACAGGAAGAATGCTGCATGTAGAAGAGGGCACATCTAATACTCTTGGTGGATTCATTATGCGAGACTTACACATAAGGAATGTGGTACTTAGAGAGGATGGTGCTGGGGAAATTGTATACTTAAATCTTCCTGTTCGCGGAGGAATGTTCGATGTAACATTCACAAGCTCCGCGATTAATGTAGGTGGACGATCTAAACTTGGTGGGGATATGCTTAAAACTGTATCACCTTTTGAATTTTTATGTGAAGGGGTTACATTCTGGGGTTGCGGTATTGGATGGGATATCATAAGCGGTCCTCAATCCGACACCTTTGATTGTCAAGGTGTAGTTTTTAACGAATGCACTATAGGAATGATAGGTTTCCGAGGGGCTGGAGGCTCAGGCAACAACAACTTCAAGTTCTCTGGGAAGTTTATTGCTCAACAAGGAGGTACTTATGTGTCTGGGGGAAAAGATGCTTTTGCTATAACTTCTGTTGTGTCTACATCTGGTAATTTACTTACTGTTACTGACGCTACCAATATACTAAGCGGCAGGGCTGTTGTGGTCGGTGATGATAACACGGCTGAAGTTGCAATCATAAAGTCAATTAACGTTAATGAACTTACTCTAGATAGACCCATAACTAAATCTGGAGGTACGAGGGTATTATCTGGCAAAATAGGTGTTATTGTTATAGAGATGAGAAACCCTTCATTTGAGGGGGTGCAAATAGAAGGTTGTGACATTGGCGCTCTGTTACTAAAAGGTAGTAGGAACGTCACTTTTGACGGTTATTCTATAATAGGTACAGCAAAAGGAGTGTACGCATCCTCAGTCTTTAGGCGGCTAAATATGCTTAATGGTTCTGGTGGAACTTCAGGTACTATGCGCAACGGAGTTGCTTATAAAATATTGACACTAGACGATAACATCGAGTCTGACGCAAACAAAATATACATGAATAATATAGCTGGAGAAGGTAGTGGTTATTTTGATGACAATTTAACCTCTCTTATTGATAACGTTGGTGGATTTTTCCCTTTTATACAGATAGATTCTAGGTTGACAGGGGATACCCATATGGGAGATAACTCAGCAAGCGCGATTGAGCTTACTAATAAATCATATTTAACATTCAACCGTACAACCACAGGTAAATTCAGCAGGGTTAGATGGAGAACTGCAGATATTGATCAATGGTTCTTGAATCATACTGGCTCTGGTGGGGACTTAGGGTTTAGGAAAAGCGGACTATCTGTGGACTCTATGACCTTACTTCAGTCTAGCGGTGACATTAGGTGTGGCAGCGGGGTGTGGAGTGACCCACTCTTCAGAGTTGGATCTGTTAGATTCTGGGTTGAAGGTGTTAACGTTAGAGCTAAAGCCAGTGCACCTTCATCAGCAATTGATGGTGTAATAGTGGTTACTTTGTAG

Genome Context

Genome Context

Tertiary structure

PDB ID
f04f8fcc04b35538825d8510206e9d4db53982d381366f93b0a944cab33d6f90
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7321
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50